Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B05
         (922 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   127   1e-29
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   127   1e-29
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    72   7e-13
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    30   2.0  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    30   2.0  
Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AF063007-2|AAC16433.1|  583|Caenorhabditis elegans Hypothetical ...    29   6.2  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  127 bits (306), Expect = 1e-29
 Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = +1

Query: 187 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 363
           D+G++TS+DA+FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D
Sbjct: 58  DQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGD 117

Query: 364 MHGETPYEIMFGPDICGPGTKKVHVIFXLQG 456
            HGETPY +MFGPDICGP T++VHVI   +G
Sbjct: 118 FHGETPYNVMFGPDICGP-TRRVHVILNYKG 147



 Score =  122 bits (293), Expect = 5e-28
 Identities = 56/98 (57%), Positives = 61/98 (62%)
 Frame = +2

Query: 449 YKGKNHLIKKDIRCKDDVYTHLYTLIAKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIK 628
           YKG+N LIKK+I CK D  THLYTLI   DNTYEV ID E  ++G LE DWD LP KKIK
Sbjct: 145 YKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIK 204

Query: 629 DPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDA 742
           DP+AKKPEDW                     HIPDPDA
Sbjct: 205 DPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDA 242



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/41 (53%), Positives = 31/41 (75%)
 Frame = +3

Query: 48  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFF 170
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHK-DDFGAFKLSAGKFF 52



 Score = 33.5 bits (73), Expect = 0.22
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 596 DWDFLPPKKIKDPEAKKPEDW 658
           DW+   P+ I DP+AKKPEDW
Sbjct: 230 DWE--KPEHIPDPDAKKPEDW 248



 Score = 32.7 bits (71), Expect = 0.38
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +1

Query: 733 PRCPKPXXXXXXXXXXXXXXXIDNPXYKGVWAPKXIDXPX*KAXGSXPK 879
           P   KP               IDNP YKG W PK I  P  K     P+
Sbjct: 240 PDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPE 288


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  127 bits (306), Expect = 1e-29
 Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = +1

Query: 187 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 363
           D+G++TS+DA+FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D
Sbjct: 58  DQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGD 117

Query: 364 MHGETPYEIMFGPDICGPGTKKVHVIFXLQG 456
            HGETPY +MFGPDICGP T++VHVI   +G
Sbjct: 118 FHGETPYNVMFGPDICGP-TRRVHVILNYKG 147



 Score =  122 bits (293), Expect = 5e-28
 Identities = 56/98 (57%), Positives = 61/98 (62%)
 Frame = +2

Query: 449 YKGKNHLIKKDIRCKDDVYTHLYTLIAKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIK 628
           YKG+N LIKK+I CK D  THLYTLI   DNTYEV ID E  ++G LE DWD LP KKIK
Sbjct: 145 YKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIK 204

Query: 629 DPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDA 742
           DP+AKKPEDW                     HIPDPDA
Sbjct: 205 DPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDA 242



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/41 (53%), Positives = 31/41 (75%)
 Frame = +3

Query: 48  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFF 170
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHK-DDFGAFKLSAGKFF 52



 Score = 33.5 bits (73), Expect = 0.22
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 596 DWDFLPPKKIKDPEAKKPEDW 658
           DW+   P+ I DP+AKKPEDW
Sbjct: 230 DWE--KPEHIPDPDAKKPEDW 248



 Score = 32.7 bits (71), Expect = 0.38
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +1

Query: 733 PRCPKPXXXXXXXXXXXXXXXIDNPXYKGVWAPKXIDXPX*KAXGSXPK 879
           P   KP               IDNP YKG W PK I  P  K     P+
Sbjct: 240 PDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPE 288


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
 Frame = +1

Query: 181 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 351
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + 
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 352 EQKDMHGETPYEIMFGPDICGPGTKKVHVIF 444
           +  +   +T Y IMFGPD CG  T KVH+IF
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIF 196



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 494 DDVYTHLYTLIAKPDNTYEVLIDNEKVESGDLEADWD--FLPPKKIKDPEAKKPEDW 658
           DD  THL+TL+ KP   Y V +D + +  G++ +D      PPK+I D    KP DW
Sbjct: 223 DDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDW 279



 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 530 KPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 658
           KPD+  E    +   E+     DW+    + I DPEAKKP+DW
Sbjct: 292 KPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDW 334



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 560 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 658
           +N + ES     DWD   P+ + D  A KP DW
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDW 315


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 458   KNHLIKKDIRCKDDVYTHLYTLIAKPDNTYEV-LIDNEKVES 580
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 458   KNHLIKKDIRCKDDVYTHLYTLIAKPDNTYEV-LIDNEKVES 580
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical
           protein C34C6.5a protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 272 WSSSSLSNMNKTLTVEADTSRSLTANWSRRTCTERLHM--RLCSALTSVVQEPRRYT 436
           W SS L+  + T+  +  T RS+  + S+ TCTE  HM   +C    S  +E  + T
Sbjct: 15  WYSSLLTIFSLTIKRKLKTIRSMQDSTSKCTCTEH-HMGGTICCCCRSDAEENEQLT 70


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -2

Query: 357 LLQFAVKDLEVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFRG 202
           L + ++K+LE +      L  F S L D G  +  +  E+T E IE RI  G
Sbjct: 233 LQKLSIKELEANKDKKLKLLKFSSNLPDNGARVKLQVDEIT-EEIERRIING 283


>AF063007-2|AAC16433.1|  583|Caenorhabditis elegans Hypothetical
           protein R119.7 protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 69  EEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFXRPRG*QRFENL 206
           + K+P++++    ++  HP +++  F     +F     G +RF+NL
Sbjct: 165 QNKYPNETYPGMTLFDNHPVQQYSGFNPIDFRFDDYVEGAKRFDNL 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,015,745
Number of Sequences: 27780
Number of extensions: 453089
Number of successful extensions: 1331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)