Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B02
(1151 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 164 2e-41
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 164 2e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 164 2e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 85 2e-17
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 85 2e-17
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 44 5e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.014
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.014
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.025
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.032
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 28 2.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 164 bits (399), Expect = 2e-41
Identities = 76/87 (87%), Positives = 79/87 (90%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
D L A+RERGITI IALWKFET KY V
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNV 87
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 164 bits (399), Expect = 2e-41
Identities = 76/87 (87%), Positives = 79/87 (90%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
D L A+RERGITI IALWKFET KY V
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNV 87
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 164 bits (399), Expect = 2e-41
Identities = 76/87 (87%), Positives = 79/87 (90%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
D L A+RERGITI IALWKFET KY V
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNV 87
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 85.0 bits (201), Expect = 2e-17
Identities = 38/78 (48%), Positives = 54/78 (69%)
Frame = +2
Query: 125 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLX 304
K H+NIV IGHVD+GKST G++++ G + KRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 305 ADRERGITIGIALWKFET 358
+RE+G T+ + FET
Sbjct: 296 EEREKGKTVEVGRAYFET 313
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 84.6 bits (200), Expect = 2e-17
Identities = 37/80 (46%), Positives = 53/80 (66%)
Frame = +2
Query: 125 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLX 304
K +++VV GHVDSGKST G ++++ G I R+++K EA GKGSF YAW+LD
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 305 ADRERGITIGIALWKFETSK 364
+R RG+T+ +A FE+ K
Sbjct: 235 EERARGVTMDVASTTFESDK 254
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 43.6 bits (98), Expect = 5e-05
Identities = 30/90 (33%), Positives = 44/90 (48%)
Frame = +2
Query: 119 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDX 298
++K H+NI IGHVD GK+T T I KC ++G+ SF +D
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 299 LXADRERGITIGIALWKFETSKYYVDHH*C 388
++ RGITI A ++ET+ + H C
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDC 123
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.014
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 208
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.014
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 208
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.7 bits (76), Expect = 0.025
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRE 316
N+ +I H+D+GK+T T ++Y G F + G V+D L A+R+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 317 RGITIGIALWKF 352
RGITI A F
Sbjct: 77 RGITINSAAISF 88
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.032
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRE 316
NI + H+DSGK+T T ++Y G I K+ E+ +G +D + +RE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 317 RGITI 331
+GITI
Sbjct: 111 KGITI 115
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 330 IVIPRSRSAXXLSNTQAYLKDPLPISWASFSNFSMVRLXIPPH 202
I IP+ A + N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,724
Number of Sequences: 5004
Number of extensions: 29617
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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