Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B02
         (1151 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                94   2e-19
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 76   5e-14
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           47   3e-05
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.76 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      31   1.7  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        29   5.3  
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           29   5.3  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     29   9.3  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 43/49 (87%), Positives = 45/49 (91%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEM 259
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 76.2 bits (179), Expect = 5e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +2

Query: 257 MGKGSFKYAWVLDXLXADRERGITIGIALWKFETSKYYV 373
           MGKGSFKYAWVLD L A+RERGITI IALWKFET KYYV
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYV 39


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 34/54 (62%)
 Frame = +2

Query: 197 YKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRERGITIGIALWKFET 358
           Y  G + KRT+EK+E+EA+E  + ++  +W LD    +R++G T+ +    F+T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDT 219


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.76
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 208
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 23/65 (35%), Positives = 29/65 (44%)
 Frame = +2

Query: 137  NIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRE 316
            N  ++ HVD GKST    L+   G I K +  K                 VLD L  +RE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 317  RGITI 331
            RGIT+
Sbjct: 1987 RGITV 1991


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 322 TTLTISXXXVQYPSIFEGSFTHFXXXXXXXLDGTFXNTTTFVDQVTS 182
           TT+T S     YPS+   +  +F        D T  N TT V  +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282



 Score = 29.5 bits (63), Expect = 5.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 322 TTLTISXXXVQYPSIFEGSFTHFXXXXXXXLDGTFXNTTTFVDQVTS 182
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 340 SNTDCDTTLTISXXXVQYPSIFEGSFTHFXXXXXXXLDGTFXNTTTFVDQVTS 182
           +  D  TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 341 TTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393



 Score = 29.9 bits (64), Expect = 4.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 322 TTLTISXXXVQYPSIFEGSFTHFXXXXXXXLDGTFXNTTTFVDQVTS 182
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 128 THINIVVIGHVDSGKSTTTGHLIY 199
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 322 TTLTISXXXVQYPSIFEGSFTHFXXXXXXXLDGTFXNTTTFVDQVTS 182
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 322 TTLTISXXXVQYPSIFEGSFTHFXXXXXXXLDGTFXNTTTFVDQVTS 182
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 18  TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64



 Score = 29.5 bits (63), Expect = 5.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 322 TTLTISXXXVQYPSIFEGSFTHFXXXXXXXLDGTFXNTTTFVDQVTS 182
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +2

Query: 146 VIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRERGI 325
           +I H D+GK+T T  L+   G I         +EA  +     K     D +  +R+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 326 TIGIALWKF 352
           ++  ++  F
Sbjct: 66  SVATSVLAF 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,562,907
Number of Sequences: 59808
Number of extensions: 254888
Number of successful extensions: 530
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3557217900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)