Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B02
(1151 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 173 2e-43
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 173 2e-43
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 173 2e-43
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 173 2e-43
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 131 1e-30
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 93 3e-19
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 93 3e-19
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 86 4e-17
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 38 0.010
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.054
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.054
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.054
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.12
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.50
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.50
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.88
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 8.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 8.2
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 8.2
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 8.2
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 173 bits (421), Expect = 2e-43
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
D L A+RERGITI IALWKFET+KYY+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYI 87
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 173 bits (421), Expect = 2e-43
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
D L A+RERGITI IALWKFET+KYY+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYI 87
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 173 bits (421), Expect = 2e-43
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
D L A+RERGITI IALWKFET+KYY+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYI 87
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 173 bits (421), Expect = 2e-43
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
D L A+RERGITI IALWKFET+KYY+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYI 87
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 131 bits (316), Expect = 1e-30
Identities = 60/63 (95%), Positives = 60/63 (95%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 293 DXL 301
D L
Sbjct: 61 DKL 63
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 93.1 bits (221), Expect = 3e-19
Identities = 42/80 (52%), Positives = 55/80 (68%)
Frame = +2
Query: 122 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXL 301
+K IN++V+GHVD+GKST GHL++ + RTI+KF+ EA GK SF YAWVLD
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 302 XADRERGITIGIALWKFETS 361
+RERG+T+ I FETS
Sbjct: 227 EEERERGVTMDIGRTSFETS 246
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 93.1 bits (221), Expect = 3e-19
Identities = 42/80 (52%), Positives = 55/80 (68%)
Frame = +2
Query: 122 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXL 301
+K IN++V+GHVD+GKST GHL++ + RTI+KF+ EA GK SF YAWVLD
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 302 XADRERGITIGIALWKFETS 361
+RERG+T+ I FETS
Sbjct: 245 EEERERGVTMDIGRTSFETS 264
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 86.2 bits (204), Expect = 4e-17
Identities = 38/83 (45%), Positives = 56/83 (67%)
Frame = +2
Query: 116 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLD 295
G K HIN+V +GHVD+GKST G L++ G + KRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 296 XLXADRERGITIGIALWKFETSK 364
+RE+G T+ + FET K
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEK 186
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 38.3 bits (85), Expect = 0.010
Identities = 27/65 (41%), Positives = 34/65 (52%)
Frame = +2
Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRE 316
NI VI HVD+GK+T T L+Y G I A + KG+ V D L +RE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 317 RGITI 331
RGIT+
Sbjct: 74 RGITV 78
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 35.9 bits (79), Expect = 0.054
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 119 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWV 289
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 290 LDXLXADR 313
L+ A R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.054
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 119 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWV 289
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 290 LDXLXADR 313
L+ A R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.054
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 119 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWV 289
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 290 LDXLXADR 313
L+ A R
Sbjct: 106 LEYETAKR 113
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 34.7 bits (76), Expect = 0.12
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +2
Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRE 316
NI + H+DSGK+T T ++Y G I ++ +G +D + +R+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRI----------DSMHEVRGKDDVGATMDFMDLERQ 95
Query: 317 RGITIGIALWKFETSKYYVDHH 382
RGITI +++ YVD H
Sbjct: 96 RGITI-------QSAATYVDWH 110
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.50
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 208
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.50
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 208
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 31.9 bits (69), Expect = 0.88
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGGI---XKRTIEKFEKEAQ 253
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 134 INIVVIGHVDSGKSTTT 184
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 134 INIVVIGHVDSGKSTTT 184
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 125 KTHINIVVIGHVDSGKSTTT 184
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 125 KTHINIVVIGHVDSGKSTTT 184
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,387,350
Number of Sequences: 27780
Number of extensions: 189966
Number of successful extensions: 440
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3130337400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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