Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B02
         (1151 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   174   1e-45
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   173   2e-45
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    59   6e-11
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    33   0.006
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.95 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   2.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  174 bits (424), Expect = 1e-45
 Identities = 81/87 (93%), Positives = 82/87 (94%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
           D L A+RERGITI IALWKFETSKYYV
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYV 87



 Score = 25.8 bits (54), Expect = 0.72
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 GXXDLIXNMITGTSQS 441
           G  D I NMITGTSQ+
Sbjct: 94  GHRDFIKNMITGTSQA 109


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  173 bits (421), Expect = 2e-45
 Identities = 80/87 (91%), Positives = 82/87 (94%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGI KRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 293 DXLXADRERGITIGIALWKFETSKYYV 373
           D L A+RERGITI IALWKFET+KYYV
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYV 87



 Score = 25.8 bits (54), Expect = 0.72
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 GXXDLIXNMITGTSQS 441
           G  D I NMITGTSQ+
Sbjct: 94  GHRDFIKNMITGTSQA 109


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 59.3 bits (137), Expect = 6e-11
 Identities = 26/30 (86%), Positives = 27/30 (90%)
 Frame = +2

Query: 284 WVLDXLXADRERGITIGIALWKFETSKYYV 373
           WVLD L A+RERGITI IALWKFETSKYYV
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYV 30



 Score = 25.8 bits (54), Expect = 0.72
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 GXXDLIXNMITGTSQS 441
           G  D I NMITGTSQ+
Sbjct: 37  GHRDFIKNMITGTSQA 52


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 32.7 bits (71), Expect = 0.006
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 335 IALWKFETSKYYV 373
           IALWKFETSKYYV
Sbjct: 2   IALWKFETSKYYV 14



 Score = 25.8 bits (54), Expect = 0.72
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 GXXDLIXNMITGTSQS 441
           G  D I NMITGTSQ+
Sbjct: 21  GHRDFIKNMITGTSQA 36


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.95
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 125 KTHINIVVIGHVDSGKST 178
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 134 INIVVIGHVDSGKST 178
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,295
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39042324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)