Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B02
         (1151 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...   156   3e-38
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...   156   3e-38
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...   156   3e-38
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...   156   3e-38
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    91   2e-18
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    72   8e-13
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide...    45   8e-05
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,...    40   0.004
At1g62750.1 68414.m07082 elongation factor Tu family protein sim...    33   0.36 
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    33   0.47 
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati...    31   1.4  
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    31   1.4  
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p...    29   5.8  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    29   5.8  
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative            29   7.6  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score =  156 bits (378), Expect = 3e-38
 Identities = 73/86 (84%), Positives = 76/86 (88%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGI KR IE+FEKEA EM K SFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 293 DXLXADRERGITIGIALWKFETSKYY 370
           D L A+RERGITI IALWKFET+KYY
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYY 86


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  156 bits (378), Expect = 3e-38
 Identities = 73/86 (84%), Positives = 76/86 (88%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGI KR IE+FEKEA EM K SFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 293 DXLXADRERGITIGIALWKFETSKYY 370
           D L A+RERGITI IALWKFET+KYY
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYY 86


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  156 bits (378), Expect = 3e-38
 Identities = 73/86 (84%), Positives = 76/86 (88%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGI KR IE+FEKEA EM K SFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 293 DXLXADRERGITIGIALWKFETSKYY 370
           D L A+RERGITI IALWKFET+KYY
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYY 86


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  156 bits (378), Expect = 3e-38
 Identities = 73/86 (84%), Positives = 76/86 (88%)
 Frame = +2

Query: 113 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGI KR IE+FEKEA EM K SFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 293 DXLXADRERGITIGIALWKFETSKYY 370
           D L A+RERGITI IALWKFET+KYY
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYY 86


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 38/82 (46%), Positives = 59/82 (71%)
 Frame = +2

Query: 128 THINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXA 307
           + +N+ ++GHVDSGKST +G L++  G I ++ + K+EKEA+  GKGSF YAW LD    
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297

Query: 308 DRERGITIGIALWKFETSKYYV 373
           +RERGIT+ +A+  F + +++V
Sbjct: 298 ERERGITMTVAVAYFNSKRHHV 319


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 71.7 bits (168), Expect = 8e-13
 Identities = 31/79 (39%), Positives = 52/79 (65%)
 Frame = +2

Query: 122 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXL 301
           +K H+N+V IGHVD+GKST  G +++  G +  R I+K+EKEA++  + S+  A+++D  
Sbjct: 98  KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157

Query: 302 XADRERGITIGIALWKFET 358
             +R +G T+ +    FET
Sbjct: 158 EEERLKGKTVEVGRAHFET 176


>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
           identical to SWISS-PROT:P17745 elongation factor Tu,
           chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
          Length = 476

 Score = 45.2 bits (102), Expect = 8e-05
 Identities = 29/93 (31%), Positives = 42/93 (45%)
 Frame = +2

Query: 110 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWV 289
           K  ++K H+NI  IGHVD GK+T T  L      I     +K+++               
Sbjct: 72  KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116

Query: 290 LDXLXADRERGITIGIALWKFETSKYYVDHH*C 388
           +D    +R RGITI  A  ++ET   +  H  C
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDC 149


>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
           putative similar to mitochondrial elongation factor Tu
           [Arabidopsis thaliana] gi|1149571|emb|CAA61511
          Length = 454

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 28/90 (31%), Positives = 41/90 (45%)
 Frame = +2

Query: 119 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDX 298
           + K H+N+  IGHVD GK+T T  +                K   E GK        +D 
Sbjct: 63  RNKPHVNVGTIGHVDHGKTTLTAAI---------------TKVLAEEGKAKAIAFDEIDK 107

Query: 299 LXADRERGITIGIALWKFETSKYYVDHH*C 388
              +++RGITI  A  ++ET+K +  H  C
Sbjct: 108 APEEKKRGITIATAHVEYETAKRHYAHVDC 137


>At1g62750.1 68414.m07082 elongation factor Tu family protein
           similar to elongation factor G SP:P34811 [Glycine max
           (Soybean)]
          Length = 783

 Score = 33.1 bits (72), Expect = 0.36
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +2

Query: 125 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLX 304
           K + NI ++ H+D+GK+TTT  ++Y  G   K           E+ +G+      +D + 
Sbjct: 94  KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTA----TMDWME 140

Query: 305 ADRERGITI 331
            ++ERGITI
Sbjct: 141 QEQERGITI 149


>At3g22980.1 68416.m02898 elongation factor Tu family protein
           similar to eukaryotic translation elongation factor 2
           GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 32.7 bits (71), Expect = 0.47
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGG 211
           NI ++ HVD GK+T   HLI   GG
Sbjct: 11  NICILAHVDHGKTTLADHLIASSGG 35


>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
           similar to SP|P25039 Elongation factor G 1,
           mitochondrial precursor (mEF-G-1) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03764: Elongation factor
           G domain IV, PF00679: Elongation factor G C-terminus
          Length = 754

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +2

Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRE 316
           NI +  H+DSGK+T T  +++  G    R  E  E   ++ G G+      +D +  +RE
Sbjct: 67  NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116

Query: 317 RGITI 331
           +GITI
Sbjct: 117 KGITI 121


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +2

Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRE 316
           NI +  H+DSGK+T T  +++  G    R  E  E   ++ G G+      +D +  +RE
Sbjct: 67  NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116

Query: 317 RGITI 331
           +GITI
Sbjct: 117 KGITI 121


>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
           putative similar to ELONGATION FACTOR 2 GB:O14460 from
           [Schizosaccharomyces pombe]
          Length = 843

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 137 NIVVIGHVDSGKSTTTGHLIYKCG 208
           N+ VI HVD GKST T  L+   G
Sbjct: 21  NMSVIAHVDHGKSTLTDSLVAAAG 44


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 21/86 (24%), Positives = 24/86 (27%), Gaps = 1/86 (1%)
 Frame = +3

Query: 627 PAXXPXPXSSXXAPXXXXGTXXXXRNXXPXXXGXAGPDXXXLPXTXPGXGS-RXXAXPPX 803
           P   P P S   AP              P       P     P   P        A PP 
Sbjct: 12  PVAPPGPSSKPVAPPGPSPCPSPPPKPQPKPPPAPSPSPCPSPPPKPQPKPVPPPACPPT 71

Query: 804 XPWXXXAXLPPPXXRRSPXXAPXALP 881
            P       PPP  + +P  AP  +P
Sbjct: 72  PPKPQPKPAPPPEPKPAPPPAPKPVP 97


>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
          Length = 681

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = +2

Query: 137 NIVVIGHVDSGKSTTTGHLIYKCGGIXKRTIEKFEKEAQEMGKGSFKYAWVLDXLXADRE 316
           N  +I H+D GKST    L+   G +  R +           K  F     LD +  +RE
Sbjct: 88  NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131

Query: 317 RGITI 331
           RGITI
Sbjct: 132 RGITI 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,696
Number of Sequences: 28952
Number of extensions: 175956
Number of successful extensions: 480
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2918645296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)