Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B01
         (842 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_19696| Best HMM Match : Integrin_alpha (HMM E-Value=9.6)            28   8.2  

>SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 397 ISSGWKERGIWRCCRIDSLLRHPLPGN-LSKMIQMTIRASRIHLRKPP*WEALHLWLIKN 573
           +S+ W ERG     R+ + LR  +  + L  ++ +TI        KP   E    WL K 
Sbjct: 593 VSNAWPERGASAIKRLKTRLRSSMKNDMLQALMHVTINGPSTSECKPIIEEVTRQWLAKP 652

Query: 574 RK 579
           R+
Sbjct: 653 RR 654


>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1111

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 397  ISSGWKERGIWRCCRIDSLLRHPLPGN-LSKMIQMTIRASRIHLRKPP*WEALHLWLIKN 573
            +S+ W ERG     R+ + LR  +  + L  ++ +TI        KP   E    WL K 
Sbjct: 964  VSNAWPERGASAIKRLKTRLRSSMKNDMLQALMHVTINGPSTSECKPIIEEVTRQWLAKP 1023

Query: 574  RK 579
            R+
Sbjct: 1024 RR 1025


>SB_19696| Best HMM Match : Integrin_alpha (HMM E-Value=9.6)
          Length = 73

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311 SKLTKRR-NKGEARGFIQQRANDKRDVYS**VQAGKREGYGDV 436
           +++TK+  + GE R FI+QR   K       V +GK E  GD+
Sbjct: 14  NRITKKMLHIGEIRFFIEQRKRGKNGEIPFFVDSGKNEKIGDI 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,157
Number of Sequences: 59808
Number of extensions: 322839
Number of successful extensions: 809
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)