Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B01
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...    28   9.5  

>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = -1

Query: 281 RVRPRVLRNICFCRSCFRLLNRRSGRFVVFKNSDYTSMS*DTIECDFHKKNPTKCKYTRM 102
           ++R ++LR+  F   CFR+LN      V+   ++Y+  S   I  + + ++  + ++ RM
Sbjct: 422 QMRDKLLRSPSFEHGCFRMLNYNPIEIVIVFETNYSGGSYGAITYN-NGESKFRIQFDRM 480

Query: 101 NY 96
           N+
Sbjct: 481 NF 482


>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 252 NITKNSRSNSKDSLAEDN--VSQSSLSGGIKGKLVALFSKEQTISE 383
           NI  NS  N    L  D   + +S L+G I G L  L  KEQT+SE
Sbjct: 322 NIICNSLLNVAKELVTDGNQLVKSELAGVIMG-LAPLIGKEQTVSE 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,543,887
Number of Sequences: 27780
Number of extensions: 246441
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)