Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B01
         (842 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32620.1 68417.m04644 expressed protein predicted protein T10...    33   0.24 

>At4g32620.1 68417.m04644 expressed protein predicted protein
           T10M13.8, Arabidopsis thaliana
          Length = 1544

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +3

Query: 576 EVIANIPKVTFEEKT-KEQNGDVVXREGDXDAEKIVGSQPXKRKN--SQDSPAVVSVLXD 746
           E++ NIPKVT EE + ++Q   V  ++ D D ++   + P + +N  S  SP     L  
Sbjct: 158 ELVVNIPKVTAEESSVQDQPSKVEEKDSDKDIKESNSAAPLQLENGHSNQSPVKDDQLVV 217

Query: 747 VKR 755
           VK+
Sbjct: 218 VKQ 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,695,014
Number of Sequences: 28952
Number of extensions: 227992
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)