Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A24
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   150   3e-37
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   149   4e-37
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   4.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   5.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   7.8  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   7.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  150 bits (363), Expect = 3e-37
 Identities = 68/131 (51%), Positives = 86/131 (65%)
 Frame = +3

Query: 375 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 554
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE+
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEV 150

Query: 555 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 734
           PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210

Query: 735 XNXDQGLTRAF 767
            N D G+ +AF
Sbjct: 211 FNEDTGIVKAF 221



 Score =  134 bits (324), Expect = 2e-32
 Identities = 62/90 (68%), Positives = 73/90 (81%)
 Frame = +2

Query: 101 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 280
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 281 HQTSAESWGTGRAVARIPRVRGGGTHRSGQ 370
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQ 89


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  149 bits (362), Expect = 4e-37
 Identities = 68/131 (51%), Positives = 86/131 (65%)
 Frame = +3

Query: 375 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 554
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE+
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEV 150

Query: 555 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 734
           PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210

Query: 735 XNXDQGLTRAF 767
            N D G+ +AF
Sbjct: 211 FNEDAGIVKAF 221



 Score =  135 bits (326), Expect = 9e-33
 Identities = 63/90 (70%), Positives = 73/90 (81%)
 Frame = +2

Query: 101 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 280
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 281 HQTSAESWGTGRAVARIPRVRGGGTHRSGQ 370
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQ 89


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 554 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPPGLRGGEHTSTTT 390
           KLG  FNN SS+++E +     N  CQ  S L+ +       P  R   + ST+T
Sbjct: 253 KLGYYFNNTSSTISEEF--KKRNKECQYDSVLNRLTFPTEQYPIWRPEYNFSTST 305


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 162 APCTVSLFSEYTDTKGRATDRLISLL 85
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 100 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 210
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 175 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 270
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,551
Number of Sequences: 5004
Number of extensions: 65015
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)