Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A24
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   140   1e-33
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    30   2.4  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    29   5.6  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  140 bits (339), Expect = 1e-33
 Identities = 66/131 (50%), Positives = 83/131 (63%)
 Frame = +3

Query: 375 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 554
           AFGNMCRGG MFAP K +RRWH                         QARGH+I+++ E+
Sbjct: 90  AFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEV 149

Query: 555 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 734
           PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209

Query: 735 XNXDQGLTRAF 767
              D    RAF
Sbjct: 210 YGQDAECARAF 220



 Score =  117 bits (281), Expect = 1e-26
 Identities = 57/88 (64%), Positives = 67/88 (76%)
 Frame = +2

Query: 110 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 289
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 290 SAESWGTGRAVARIPRVRGGGTHRSGQG 373
           SAESWGTGRAVARIPRVRGGGTHRSGQG
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQG 89


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 431 PPGLRGGEHTSTTTHVTEGXPD--RTYGYHHHGHAEFGQQHVRYPMIRHWF 285
           P GLRG   T T  + +    +  R + YH + + +F      Y   RHW+
Sbjct: 550 PIGLRGINFTDTDRNASRTFSNIIRRFSYHQNPNFQFDGSWAAYEPRRHWY 600


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -1

Query: 713 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 561
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = -1

Query: 437 PAPPGLRGGEHTSTTTHVTEGXPDRTYGYHHHGH---AEFGQQHVRYPMIRHWFGDQPPC 267
           P  PG R G H     H  +G     +G+HHH H     F   H  +     W    PPC
Sbjct: 388 PHCPG-RHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHFPPFW----PPC 442


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
            protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 452  VDATVPAPPGLRGGEHTSTTTHVTEGXPDRT-YGYHHHGHAEFG 324
            V+A++P    L  G+H S   H  EG  D + + +HHH    FG
Sbjct: 878  VEASLPFYEKLWYGDHASHQGH--EGHGDHSGHNHHHHKETSFG 919


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 569 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 429
           GY  G + N+  N VS+ + + ++AS+S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,960
Number of Sequences: 27780
Number of extensions: 411076
Number of successful extensions: 1312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)