Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_A23
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 308 9e-85
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 173 2e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 167 1e-42
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 138 1e-33
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 85 2e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 83 4e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 83 7e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 60 4e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 36 0.006
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.65
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 4.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.1
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 308 bits (755), Expect = 9e-85
Identities = 140/153 (91%), Positives = 146/153 (95%)
Frame = +1
Query: 187 PRXVGRPRHQGVMVGMGQKNSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 366
P VGRPRH G+MVGMGQK+SYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFY
Sbjct: 32 PSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFY 91
Query: 367 NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGI 546
NELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGI
Sbjct: 92 NELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGI 151
Query: 547 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 645
VLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 152 VLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
Score = 68.5 bits (160), Expect = 1e-12
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPS 191
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPS 33
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 173 bits (422), Expect = 2e-44
Identities = 78/154 (50%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Frame = +1
Query: 187 PRXVGRPRHQGVMVGMGQKNSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 366
P VGR +H+ VM QK+ +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + +
Sbjct: 36 PTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYS 95
Query: 367 NE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 543
++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTG
Sbjct: 96 DQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTG 155
Query: 544 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 645
IVL+ GDG++H+VPIY+G+++P AI + ++ GRD
Sbjct: 156 IVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRD 189
Score = 43.2 bits (97), Expect = 5e-05
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPS 191
+ +DNGSG KAGFAGDD P+ +FP+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPT 37
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 167 bits (407), Expect = 1e-42
Identities = 77/155 (49%), Positives = 111/155 (71%), Gaps = 2/155 (1%)
Frame = +1
Query: 187 PRXVGRP--RHQGVMVGMGQKNSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHT 360
P VGRP R + + K+ VGDEA++ R +L +KYP+E+GI+ ++++M ++W +T
Sbjct: 30 PSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYT 89
Query: 361 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 540
F+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++
Sbjct: 90 FFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSS 149
Query: 541 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 645
G+V+DSGDGV+H VP+YE L H + RLD+AGRD
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRD 184
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 191
E A +V+DNG+G K G+A D+ PR FPS
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPS 31
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 138 bits (333), Expect = 1e-33
Identities = 66/141 (46%), Positives = 90/141 (63%), Gaps = 9/141 (6%)
Frame = +1
Query: 250 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 426
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 427 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTV 582
P NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHII 194
Query: 583 PIYEGYALPHAILRLDLAGRD 645
P+ EGY + +I + LAGRD
Sbjct: 195 PVAEGYVIGSSIKTMPLAGRD 215
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPS 191
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 84.6 bits (200), Expect = 2e-17
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +1
Query: 205 PRHQGVMVGMGQKNSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 378
P + GV + +N YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 379 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 558
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 559 GDGVSHTVPIYEGYALPHAILRLDLAG 639
G + P+ +G + I + LAG
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFKQSLAG 183
Score = 35.1 bits (77), Expect = 0.013
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPS 191
EE+ +LV+D GS + G+AG+++P + PS
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS 38
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.4 bits (197), Expect = 4e-17
Identities = 40/107 (37%), Positives = 59/107 (55%)
Frame = +1
Query: 286 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 465
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 466 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 606
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPS 191
+EV+A+V+D GS + GF+G+D P+ V PS
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPS 39
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 82.6 bits (195), Expect = 7e-17
Identities = 41/139 (29%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Frame = +1
Query: 232 MGQKNSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 408
+ + ++ VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 409 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 582
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 583 PIYEGYALPHAILRLDLAG 639
P+ G + R+ G
Sbjct: 181 PVLNGERILSEAKRISWGG 199
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVF 185
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 60.1 bits (139), Expect = 4e-10
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Frame = +1
Query: 301 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 468
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 469 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 642
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 36.3 bits (80), Expect = 0.006
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Frame = +1
Query: 250 YVGDEAQSKRGILTLKYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 417
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 418 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG--------------IVLD 555
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 556 SGDGVSHTVPIYEGYALPHAILRLDLAGR 642
SG +H +P+ + A+ R+D+ G+
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGK 191
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 361 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 504
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.65
Identities = 26/81 (32%), Positives = 32/81 (39%)
Frame = +2
Query: 359 PSTMSSVSPPRNIPSFSXXXXXXXXXXXXXXXXXCSKHSTRPPCTSPSKPCSRCTRPVVP 538
P++ SS S P IP S C+ ++ PP T S S P VP
Sbjct: 140 PTSTSSTSIP--IPPTSTSSTDTNSNPLPTTSTSCTTSTSIPP-TGGSSSLSTPITPTVP 196
Query: 539 PVSCWTPATVSPTPYPSTRDT 601
P S T +T P P ST T
Sbjct: 197 PTS--TSSTSIPIPPTSTSST 215
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 464 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPSCVWTWPVA 643
S ST PP S S + + + SC T ++ PT +T T ++ P+ T P+
Sbjct: 365 SSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSST-PLT 423
Query: 644 TXXXTRS 664
T T S
Sbjct: 424 TTNCTTS 430
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 461 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDT 601
C+ ++ PP T S S P VPP S T +T P P ST T
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSST 158
Score = 25.8 bits (54), Expect = 8.0
Identities = 25/81 (30%), Positives = 31/81 (38%)
Frame = +2
Query: 359 PSTMSSVSPPRNIPSFSXXXXXXXXXXXXXXXXXCSKHSTRPPCTSPSKPCSRCTRPVVP 538
P++ SS S P IP S C+ ++ P T S S P VP
Sbjct: 197 PTSTSSTSIP--IPPTSTSSTDTNSSPLPTTSTSCTTSTSIP--TGGSSSLSTPITPTVP 252
Query: 539 PVSCWTPATVSPTPYPSTRDT 601
P S T +T P P ST T
Sbjct: 253 PTS--TSSTSIPIPPTSTSST 271
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 485 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPS 619
P T+P P T PV P S P+ P P PS+ PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 506 PCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSLTPSCV 625
P SR T+P+ S +P VSP PST ++ + V
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFV 301
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 403 LLTEAPLNPKANREKMTQIMFETFN 477
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 482 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPS 589
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 153 NRPCTYRSHCLLPTRQLP 100
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,217
Number of Sequences: 5004
Number of extensions: 62819
Number of successful extensions: 239
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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