Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_A22
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 35 0.072
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 32 0.51
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 30 2.0
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 29 4.7
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 29 6.2
07_01_0040 + 325737-328181 28 8.3
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 35.1 bits (77), Expect = 0.072
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Frame = +1
Query: 241 FMKKINLFSRQ--VEQSYSTLKAQIPYNNANITTNLIRSNIEVISNLN--DVKEIKIEPL 408
F+KK+ L S Q +E + +L+ + + N+ S ++ +L VK+ + +
Sbjct: 956 FLKKMKLESMQKIIEMTVPSLEELMLIDMPNLERCSCTSMRDLNCSLRVLKVKKCPVLKV 1015
Query: 409 TPQFQDDIEIEVKLEE-APNISKSTVRSLPEPLQIPHNNVNMSTILNNYNFKVISTSNDV 585
P F+D + E++ + ++SK T+ P L + HN + STI+ + +ST +
Sbjct: 1016 FPLFEDCQKFEIERKSWLSHLSKLTIHDCPH-LHV-HNPLPPSTIVLELSIAKVSTLPTL 1073
Query: 586 KEIKIEPITARYEDDEDENDIEVKLEEK----HNIS 681
K +T +D+D D + L++ HN+S
Sbjct: 1074 KGSSNGTLTIWLPNDDDVPDKLITLDDNIMSFHNLS 1109
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 32.3 bits (70), Expect = 0.51
Identities = 27/143 (18%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Frame = +1
Query: 331 TTNLIRSNIEVISNLNDVKEIKIEPLTPQFQDDIEIEVKLEEAPNISKSTVRSLPEPLQI 510
T ++ + + + +L + + E LT + ++ V+L+EA +++ V + + LQ
Sbjct: 489 TKAMLENEVAAVKSLRESLQSTEEALTDSRSEVSKLSVELDEANRMNQDLVLQISK-LQD 547
Query: 511 PHNNVN--MSTILNNYNFKVISTSNDVKEIKIEPITARYEDDEDENDIEVKLEEKHNISK 684
N + ++ L + S+++ +K + E + N++ +E + N+ K
Sbjct: 548 EFNEMQEGLTNKLGEVESVSKALSDELVSVKEMVHKGQEELEATSNELASIVEARDNLKK 607
Query: 685 AQYRVFRNFTGTSSTGHXPRRTI 753
VF+ TS R+T+
Sbjct: 608 ELLDVFKKLESTSQELVDERKTV 630
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +1
Query: 517 NNVNMSTILNNYNFKVISTSND--VKEIKIEPITARYEDDEDENDIEVK--LEEK 669
+++++S IL N N+ ++ P Y+DD+DE+D+E++ +EEK
Sbjct: 280 HDMDISHILPNLNYDEQQRDGPWVLQHYNYRPFNFNYDDDDDEDDVELEPIVEEK 334
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +1
Query: 559 KVISTSNDVKEIKIEPITARYEDDEDENDIEVKLEEKHNISKAQYRVFRNFTGTSSTGHX 738
K + ND E+ +T Y D + D ++ E+K+N + + R F
Sbjct: 389 KFLEGLND--ELSYPLMTGEYHDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKAQQGNSQR 446
Query: 739 PRRTIXPR 762
PR T+ P+
Sbjct: 447 PRLTLGPQ 454
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/127 (19%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Frame = +1
Query: 340 LIRSNIEVISNLNDVKEIKIEPLTPQFQDDIEIEVKLEEAPNISKSTVRSLPEPLQ--IP 513
+I +++E N + E+ +TP + I + + N+S+ T E LQ +
Sbjct: 1092 VISTSVEDAQEGNPLVELSSVKITPHTSNGPSIPQLIHQISNVSEVTSLDKREALQQLVT 1151
Query: 514 HNNVNMSTILNNYNFKVIST--------SNDVKEIKIEPITARYEDDED--ENDIEVKLE 663
+ N ++I Y ++++T + ++E+ + + + +D E IE+ LE
Sbjct: 1152 ASTNNDNSIWTKYFNQILTTILEVLDDSDSSIRELSLSLVAEMLHNQKDPMEESIEIVLE 1211
Query: 664 EKHNISK 684
+ +++K
Sbjct: 1212 KLLHVTK 1218
>07_01_0040 + 325737-328181
Length = 814
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -3
Query: 416 CGVKGSILISLTSFKFDITSILLRMRFVVMFALLYGICALSVE*LCSTCLENRLIFFMKL 237
C ++I++ F + +L + + +ALL G AL V + NR+I F++
Sbjct: 344 CVGTACLVIAILLFALLDKTAILPVDRAITYALLLGGLALDVAAILMLLCSNRMIVFLEA 403
Query: 236 WHLTHTNR 213
H+ +R
Sbjct: 404 KHMAWLSR 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,347
Number of Sequences: 37544
Number of extensions: 284944
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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