Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A22
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  32   0.68 
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_18493| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_4583| Best HMM Match : Calx-beta (HMM E-Value=0.00046)              28   8.4  
SB_324| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.4  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   8.4  

>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +1

Query: 580 DVKEIKIEPITARYEDDEDENDIEVKLEEKHNISKAQYRVFRNFTGTSSTGHXPRRTIXP 759
           DV  + ++ I A+     D NDIE  L E+    K Q     N      TGH  + T+  
Sbjct: 479 DVSNLVVKRIEAQRRLQADPNDIEAMLLEQEVSLKMQSWAQSNVKPGQFTGHAAKSTLSK 538

Query: 760 RXPXTLLAHGSTXH 801
           +   +   HG   H
Sbjct: 539 QEIHSGYQHGPKSH 552


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +1

Query: 421  QDDIE-IEVKLEEAPNISKSTVRSLPEPLQIPHNNVNMSTILNNYNFKVISTSNDVKEIK 597
            +DD++ +E+K+++   +   T   L + L+   NN+  ++     N+ V+   +D+ + K
Sbjct: 1429 EDDVKMLELKVDQLQKMLAET-NKLNDKLKKDLNNLKRTSWDQRNNYSVVKKESDIHKNK 1487

Query: 598  IEPITARYEDDEDENDI 648
            +E   A  E DE E+++
Sbjct: 1488 VE--MAEKERDELESEL 1502


>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 175 LQNHFKEKLNIQNL-FVCVKCHSFMKKINLFSRQVEQSYSTLKAQI 309
           L+N  K K    N   +C K  +  K I+LFSR++E+  +TLK  I
Sbjct: 251 LKNVIKAKGGHANYTLICSKYRTLTKNISLFSREIEE--TTLKEHI 294


>SB_18493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 499 PLQIPHNNVNMSTILNNYNFKVISTSNDVKEIKIEPITARYEDDEDENDIEVKLEEKHNI 678
           PL +P  +  + + ++     V +  ND K+ K +P TAR    E+E   + K++E  N+
Sbjct: 144 PLSLPFTH--LCSNISGDRTPVPAQENDQKDKKEDPTTARENTTEEEEVQKEKVKEDVNV 201


>SB_4583| Best HMM Match : Calx-beta (HMM E-Value=0.00046)
          Length = 286

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 244 MKKINLFSRQVEQSYSTLKAQIPYNNANITTNLIRSNIEVISNL 375
           M+K  L    V   Y TL +  P  +AN+  N+I     +ISN+
Sbjct: 134 MRKTGLAEVPVSVRYDTLDSVAPTTSANVIINIIIGISIIISNI 177


>SB_324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 499 PLQIPHNNVNMSTILNNYNFKVIST-SNDVKEIKIEPITARYEDDE 633
           P    H +V +S    N+    IS  + + K+++I P TA ++D+E
Sbjct: 175 PFITNHKDVEISPFTTNHKDVEISPFTTNHKDVEISPFTANHKDEE 220


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
 Frame = +1

Query: 250  KINLFSRQVEQSYSTLKAQIPYNNANITTNLIRSNIEVISNLNDV-------KEIK--IE 402
            K+    +QVE   + L+  +     N  ++L ++ +++ S L++V       K+++  +E
Sbjct: 982  KLQKAKKQVEDERTELEDHLQ-EEQNKVSHLTKTKLKLESTLDEVNLNLEREKKVRGEVE 1040

Query: 403  PLTPQFQDDIEIEVKLEEAPNISKSTVRSLPEPLQIPHNNVNMSTILNNYNFKVISTSND 582
             +  + + D+++  +  E     K+  R+  E  +   N V +S  L + N  V S    
Sbjct: 1041 KVKRKLEGDLKMTQQTLEETQAEKA--RTEDEVRKRDANIVELSGKLEDSNNLVESLRKR 1098

Query: 583  VKEIKIEPITARYEDDEDENDIEVKLEEKHNISKA 687
            ++E++     AR E+ E+E + E     KH ++ A
Sbjct: 1099 IRELE-----ARVEELEEELEAERNARSKHPLNGA 1128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,810
Number of Sequences: 59808
Number of extensions: 374781
Number of successful extensions: 1102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)