Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A20
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73660.1 68414.m08530 protein kinase family protein contains ...    29   2.9  
At4g14940.1 68417.m02294 copper amine oxidase, putative highly s...    24   4.4  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    28   8.9  

>At1g73660.1 68414.m08530 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 1030

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 175 VPETDYGFSSKDGAFYTDDAIVINA--HVDRSKRDITNSTRDGKQLLL-LQARQQSD 336
           +P     F++K+ A   DD +V+N   HVD   +D      +  QL L L AR+  +
Sbjct: 101 IPSPPNSFNAKNRAATVDDTVVVNGSEHVDLGSKDPAVEEENQIQLALELSAREDPE 157


>At4g14940.1 68417.m02294 copper amine oxidase, putative highly
           similar to copper amine oxidase [Arabidopsis thaliana]
           gi|2654118|gb|AAB87690
          Length = 650

 Score = 23.8 bits (49), Expect(2) = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 585 GSTTSDTCLRRSCFCIDGSV 644
           G TT+   L+ SCF  DGSV
Sbjct: 164 GETTTRRELKASCFYRDGSV 183



 Score = 23.4 bits (48), Expect(2) = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 423 SCRPFWLGWLGDGALR 470
           SC PF +GW G+   R
Sbjct: 154 SCIPFTVGWYGETTTR 169


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 431 SATLNSG*QSRKLLHVPFLPIVDTHSSPKAP 339
           S+T +    SR LLH PF P+V     P  P
Sbjct: 17  SSTADQRHHSRHLLHQPFFPVVTAAPPPYQP 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,581,493
Number of Sequences: 28952
Number of extensions: 353450
Number of successful extensions: 1099
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)