Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A19
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    57   3e-09
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.2  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    27   4.2  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   5.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.7  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
 Frame = +1

Query: 118 MCGIWATFGVTGGLT---PTCVKCFSNIRHRGPDAWRIEQDAREPLAILGFQRLAIVDGR 288
           MCGI A   V   +    P  +     +RHRGPD W     A     IL  +RLAIV   
Sbjct: 1   MCGILAVHHVAEDIEAFKPKALHLSKQLRHRGPD-W--SGKAIRNQTILCHERLAIVGVE 57

Query: 289 HGMQPMRLHCYPRTTLICNGEIYNCKRLQK--QHEFQYETNCDVEAIIHLYQRFGIEEAV 462
            G QP+ +    +  L  NGEIYN  +L++  +  ++++T  D E I++LY+  G   A 
Sbjct: 58  SGAQPL-VSDDGKLVLTVNGEIYNHLKLRENLKGNYKFKTYSDCEVILYLYREHG--PAC 114

Query: 463 TNLXRGFF 486
            N+  G F
Sbjct: 115 ANMLDGMF 122



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 470 LXGVFSFCLVDGEKNKVYIARDPYGVRPLF-SFHDPENDVLAICSEAKGL 616
           L G+FS+ L D +K+KV  ARDP G+  L+  F     D     SE K L
Sbjct: 118 LDGMFSWVLYDQDKDKVVAARDPIGITTLYQGFSSDSPDTAYFASELKAL 167


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 279 HDSETLKSENSQRLSSILLNSPRVRT 202
           HD+E  K  N  R +S L+ +PRV T
Sbjct: 745 HDNEVKKENNRIRNASSLMENPRVST 770


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 343 NGEIYNCKRLQKQHEFQYETNCDVEAIIHLYQRFGIEEAVTNLXRGFFVLP 495
           N E     R  K+H+ ++ET CD +  +  ++R  IE  V+    G    P
Sbjct: 45  NQETIENFRQAKEHKMRFETECDQK--LRNWKRLAIEREVSEEQSGEVQFP 93


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 536 DHGRYKLCSSHRRQGKTKKPRXRLVTASSMPNL*YKCMMAS 414
           D G Y   SS  RQ +T   + ++ TAS  PN+    M +S
Sbjct: 128 DDGNYS-ASSFERQNRTAPLQSKVTTASLKPNIPRTSMSSS 167


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 223 EQDAREPLAILGFQRLAIVDGRHGMQP 303
           +Q A  P  I GFQ  A++  R GMQP
Sbjct: 405 QQAAGIPSQITGFQPQAMMPQRTGMQP 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,976
Number of Sequences: 5004
Number of extensions: 57980
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)