Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_A19
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41034-7|AAN72427.1| 465|Caenorhabditis elegans Hypothetical pr... 52 5e-07
U41034-6|AAU05557.1| 538|Caenorhabditis elegans Hypothetical pr... 52 5e-07
U41034-5|AAA82381.1| 567|Caenorhabditis elegans Hypothetical pr... 52 5e-07
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 49 5e-06
Z78012-8|CAB01418.2| 945|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z75953-6|CAB00103.2| 945|Caenorhabditis elegans Hypothetical pr... 29 4.0
AY275181-1|AAP32289.1| 945|Caenorhabditis elegans soluble guany... 29 4.0
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 28 9.2
>U41034-7|AAN72427.1| 465|Caenorhabditis elegans Hypothetical
protein M02D8.4b protein.
Length = 465
Score = 52.0 bits (119), Expect = 5e-07
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Frame = +1
Query: 196 HRGPDAWRIEQDAREPLAILGFQRLAIVDGRHGMQPMRLHCYPRTTLICNGEIYNCKRLQ 375
HRGPD QD + IL +RLAI+D +QP++ P +I NGEIYN + L+
Sbjct: 32 HRGPDFSGCYQDTKTG-DILVHERLAIMD-LGVVQPLQ-GTAPNRQVIHNGEIYNHQELR 88
Query: 376 KQH--EFQYETNCDVEAIIHLYQRFGIEEAVTNLXRGF--FVLPC 498
++ +T+CD E II LY+++ + + NL G FVL C
Sbjct: 89 DTELKKYNLKTHCDSEVIIFLYEKYR-DGHICNLLDGVFAFVLCC 132
>U41034-6|AAU05557.1| 538|Caenorhabditis elegans Hypothetical
protein M02D8.4c protein.
Length = 538
Score = 52.0 bits (119), Expect = 5e-07
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Frame = +1
Query: 196 HRGPDAWRIEQDAREPLAILGFQRLAIVDGRHGMQPMRLHCYPRTTLICNGEIYNCKRLQ 375
HRGPD QD + IL +RLAI+D +QP++ P +I NGEIYN + L+
Sbjct: 32 HRGPDFSGCYQDTKTG-DILVHERLAIMD-LGVVQPLQ-GTAPNRQVIHNGEIYNHQELR 88
Query: 376 KQH--EFQYETNCDVEAIIHLYQRFGIEEAVTNLXRGF--FVLPC 498
++ +T+CD E II LY+++ + + NL G FVL C
Sbjct: 89 DTELKKYNLKTHCDSEVIIFLYEKYR-DGHICNLLDGVFAFVLCC 132
>U41034-5|AAA82381.1| 567|Caenorhabditis elegans Hypothetical
protein M02D8.4a protein.
Length = 567
Score = 52.0 bits (119), Expect = 5e-07
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Frame = +1
Query: 196 HRGPDAWRIEQDAREPLAILGFQRLAIVDGRHGMQPMRLHCYPRTTLICNGEIYNCKRLQ 375
HRGPD QD + IL +RLAI+D +QP++ P +I NGEIYN + L+
Sbjct: 32 HRGPDFSGCYQDTKTG-DILVHERLAIMD-LGVVQPLQ-GTAPNRQVIHNGEIYNHQELR 88
Query: 376 KQH--EFQYETNCDVEAIIHLYQRFGIEEAVTNLXRGF--FVLPC 498
++ +T+CD E II LY+++ + + NL G FVL C
Sbjct: 89 DTELKKYNLKTHCDSEVIIFLYEKYR-DGHICNLLDGVFAFVLCC 132
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 48.8 bits (111), Expect = 5e-06
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = +1
Query: 118 MCGIWATFGVTGGLTPTCVKCFSNIRHRGPDAWRIEQDAREPLAILGFQRLAIV--DGRH 291
MCGIWA G +TP F I RGPD +E+ +P LGF RLAIV
Sbjct: 1 MCGIWAIIGEQ--VTPQQQDAFMKIVGRGPDLTVLEEV--QPNVHLGFHRLAIVMPGDTP 56
Query: 292 GMQPMRLHCYPRTTLICNGEIYNCKRLQKQHEFQYET-NCDVEAII 426
QP+ +++CNGEIYN + L+ F + D AII
Sbjct: 57 SAQPI---VGGGLSVVCNGEIYNHQSLKIDCPFTLKNGGSDCAAII 99
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +2
Query: 452 KKPSLTLXGVFSFCLVDGEKNKVYIARDPYGVRPLFSFHDPENDVLAICSEAK 610
K+ +L GVF+F + D +KN VYI RDP GVRPLF ++ N L I SE K
Sbjct: 110 KEACASLDGVFAFIMAD-DKN-VYIGRDPIGVRPLFYGYN-SNGSLLIGSEVK 159
>Z78012-8|CAB01418.2| 945|Caenorhabditis elegans Hypothetical
protein F57F5.2 protein.
Length = 945
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -2
Query: 420 GFDITVCFILKLMLFL*AFTVVNLTITD*RSARVTV*AHRLHTVPTVHDS 271
GF I VC K+ LF+ AF VVNL T V H ++ V T+ +S
Sbjct: 439 GF-IRVCDFSKISLFIEAFEVVNLLNTIYSHLDSIVDTHGVYKVETIGES 487
>Z75953-6|CAB00103.2| 945|Caenorhabditis elegans Hypothetical
protein F57F5.2 protein.
Length = 945
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -2
Query: 420 GFDITVCFILKLMLFL*AFTVVNLTITD*RSARVTV*AHRLHTVPTVHDS 271
GF I VC K+ LF+ AF VVNL T V H ++ V T+ +S
Sbjct: 439 GF-IRVCDFSKISLFIEAFEVVNLLNTIYSHLDSIVDTHGVYKVETIGES 487
>AY275181-1|AAP32289.1| 945|Caenorhabditis elegans soluble guanylyl
cyclase GCY-33 protein.
Length = 945
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -2
Query: 420 GFDITVCFILKLMLFL*AFTVVNLTITD*RSARVTV*AHRLHTVPTVHDS 271
GF I VC K+ LF+ AF VVNL T V H ++ V T+ +S
Sbjct: 439 GF-IRVCDFSKISLFIEAFEVVNLLNTIYSHLDSIVDTHGVYKVETIGES 487
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
protein D2085.1 protein.
Length = 2198
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 353 FTTVNAYRNSMSFNMKQTVM 412
+TT N N +SFNMK VM
Sbjct: 919 YTTFNGIENDVSFNMKNAVM 938
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,626
Number of Sequences: 27780
Number of extensions: 337482
Number of successful extensions: 742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -