Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A18
         (880 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2064|AAF55213.2|  636|Drosophila melanogaster CG33207-P...    32   1.2  
AB081475-1|BAC06341.1|  636|Drosophila melanogaster transmembran...    32   1.2  
AE014296-2765|AAF49441.1|  197|Drosophila melanogaster CG16724-P...    29   6.4  

>AE014297-2064|AAF55213.2|  636|Drosophila melanogaster CG33207-PB,
           isoform B protein.
          Length = 636

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 403 QWHHVLELQVAAALEYPSRGPSLRVPSFLVQSGPYSESY 519
           Q HH  EL    ++ YPS  P  R P FLV S P  + Y
Sbjct: 185 QQHHS-ELLQGKSIHYPSGYPMTRSPPFLVSSSPGPDPY 222


>AB081475-1|BAC06341.1|  636|Drosophila melanogaster transmembrane
           protein Pxb protein.
          Length = 636

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 403 QWHHVLELQVAAALEYPSRGPSLRVPSFLVQSGPYSESY 519
           Q HH  EL    ++ YPS  P  R P FLV S P  + Y
Sbjct: 185 QQHHS-ELLQGKSIHYPSGYPMTRSPPFLVSSSPGPDPY 222


>AE014296-2765|AAF49441.1|  197|Drosophila melanogaster CG16724-PA,
           isoform A protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 362 HSRSEMSASRRRLSAPNAYDSPP 294
           HSRS  S  RRR  +P+ Y+ PP
Sbjct: 111 HSRSRSSERRRRQRSPHRYNPPP 133


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,267,733
Number of Sequences: 53049
Number of extensions: 766957
Number of successful extensions: 1706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)