Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_A17
(844 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 42 5e-04
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 41 0.001
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 40 0.002
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 40 0.003
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 38 0.011
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 38 0.011
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 38 0.011
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 38 0.011
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 38 0.011
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 37 0.015
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 37 0.015
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 37 0.019
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 37 0.019
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 37 0.019
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 37 0.019
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 37 0.019
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 37 0.019
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 37 0.019
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.025
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 36 0.025
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 36 0.025
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 36 0.034
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.034
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 36 0.034
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 36 0.034
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 36 0.044
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 36 0.044
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 36 0.044
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 36 0.044
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 35 0.059
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 35 0.059
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 35 0.078
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 34 0.10
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 34 0.14
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 33 0.18
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 33 0.18
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 33 0.18
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 33 0.18
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 33 0.18
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 33 0.24
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 33 0.24
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 33 0.24
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 33 0.24
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 33 0.31
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 33 0.31
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 33 0.31
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 33 0.31
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 32 0.41
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 32 0.41
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 32 0.41
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 32 0.55
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 31 0.72
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 31 0.72
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 31 0.72
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 31 0.72
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 31 0.72
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.72
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 31 0.96
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 31 0.96
At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40... 31 0.96
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 1.3
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 1.3
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 1.3
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 31 1.3
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 31 1.3
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 30 1.7
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 30 1.7
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 30 1.7
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 30 1.7
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 30 2.2
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 30 2.2
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 30 2.2
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 30 2.2
At4g23890.1 68417.m03436 expressed protein hypothetical protein,... 30 2.2
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 30 2.2
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 30 2.2
At2g19230.1 68415.m02245 leucine-rich repeat protein kinase, put... 30 2.2
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 30 2.2
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea... 29 2.9
At5g48850.1 68418.m06043 male sterility MS5 family protein simil... 29 2.9
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 29 2.9
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 29 2.9
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 29 2.9
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 29 2.9
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 29 2.9
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 29 2.9
At5g37560.1 68418.m04523 zinc finger protein-related contains we... 29 3.9
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 3.9
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 3.9
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 29 3.9
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 29 3.9
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 29 3.9
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 3.9
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 29 3.9
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.9
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 29 5.1
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea... 29 5.1
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 29 5.1
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 29 5.1
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 29 5.1
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 6.8
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 28 6.8
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 6.8
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 28 6.8
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 28 6.8
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 28 6.8
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 28 8.9
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 28 8.9
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 28 8.9
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 28 8.9
At2g24680.1 68415.m02947 transcriptional factor B3 family protei... 28 8.9
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +1
Query: 283 IHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYS 462
IH L ++ ++ DN+I+ + L D SL +C + GHK T VV + +LYS
Sbjct: 589 IHALAYSEYGHVYTGSGDNTIKAWSLQDGSL--LCTMSGHKSVVSTLVVVN----GVLYS 642
Query: 463 TGLDGLVKLWDI 498
DG V+LW +
Sbjct: 643 GSWDGTVRLWSL 654
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +1
Query: 397 GHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEI 549
GH A++ + +SP E+N+ S +DG V +WDIR G S L +K ++
Sbjct: 267 GHT-ASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADV 316
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 397 GHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEY 528
GH + ++ + F PK+ +LL S G+D VK+WD+ G C+ Y
Sbjct: 280 GHTKG-VSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTY 322
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
L S D ++ ++++ S + R+ HK + +T V F+P +DN S +DG V++WD
Sbjct: 377 LLSSSVDETVRLWRVGSSD--ECIRVFSHK-SFVTCVAFNPVDDNYFISGSIDGKVRIWD 433
Query: 496 I 498
+
Sbjct: 434 V 434
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +1
Query: 307 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 486
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 562 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 619
Query: 487 LWDIRAGGSCVLEYKDEEEEI 549
WDI A SCV K ++
Sbjct: 620 FWDINA--SCVRAVKGASTQV 638
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +1
Query: 307 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 486
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 564 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 621
Query: 487 LWDIRAGGSCVLEYKDEEEEI 549
WDI A SCV K ++
Sbjct: 622 FWDINA--SCVRAVKGASTQV 640
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +1
Query: 307 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 486
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 564 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 621
Query: 487 LWDIRAGGSCVLEYKDEEEEI 549
WDI A SCV K ++
Sbjct: 622 FWDINA--SCVRAVKGASTQV 640
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +1
Query: 307 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 486
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 564 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 621
Query: 487 LWDIRAGGSCVLEYKDEEEEI 549
WDI A SCV K ++
Sbjct: 622 FWDINA--SCVRAVKGASTQV 640
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +1
Query: 307 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 486
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 564 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 621
Query: 487 LWDIRAGGSCVLEYKDEEEEI 549
WDI A SCV K ++
Sbjct: 622 FWDINA--SCVRAVKGASTQV 640
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +1
Query: 307 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 486
S ++ + LSD S + +DS+L V GH + L F NL+Y+ D
Sbjct: 131 STSIVVGLSDGSASVVSFTDSNLETVQEWKGH-DFELWTASFDLNNPNLVYTGSDDCKFS 189
Query: 487 LWDIR 501
WDIR
Sbjct: 190 CWDIR 194
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +1
Query: 310 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 489
L LA S D ++ ++ +D+ + + GH + +T + F P +D+L+ S D ++
Sbjct: 706 LRLATSSFDKTVRVWD-ADNKGYSLRTFMGHS-SMVTSLDFHPIKDDLICSCDNDNEIRY 763
Query: 490 WDIRAGGSCVLEYKDEEEEI 549
W I GSC YK +I
Sbjct: 764 WSIN-NGSCTRVYKGGSTQI 782
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 36.7 bits (81), Expect = 0.019
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 289 RLDGTKSLNLAISLSDNSIEIYK-LSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYST 465
R T S+ + S D +I ++ +S + + HG E +T VF+ K+ + S+
Sbjct: 181 RYSSTGSIYITAS-KDGAIRLFDGVSAKCVRSIGNAHGKSE--VTSAVFT-KDQRFVLSS 236
Query: 466 GLDGLVKLWDIRAGGSCVLEYKDEEEEILR 555
G D VKLW+I G V EY + LR
Sbjct: 237 GKDSTVKLWEI-GSGRMVKEYLGAKRVKLR 265
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 36.7 bits (81), Expect = 0.019
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 289 RLDGTKSLNLAISLSDNSIEIYK-LSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYST 465
R T S+ + S D +I ++ +S + + HG E +T VF+ K+ + S+
Sbjct: 273 RYSSTGSIYITAS-KDGAIRLFDGVSAKCVRSIGNAHGKSE--VTSAVFT-KDQRFVLSS 328
Query: 466 GLDGLVKLWDIRAGGSCVLEYKDEEEEILR 555
G D VKLW+I G V EY + LR
Sbjct: 329 GKDSTVKLWEI-GSGRMVKEYLGAKRVKLR 357
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 36.7 bits (81), Expect = 0.019
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 513
DNSI+++ L + L + L H ++ + + D L S LD VK+W GG+
Sbjct: 286 DNSIKVWSLDN--LQCIQTLTEHTSVVMSLICW----DQFLLSCSLDNTVKIWAATEGGN 339
Query: 514 CVLEYKDEEE-EILRPYECMDVSCNGIVLCT 603
+ Y +EE +L D ++LC+
Sbjct: 340 LEVTYTHKEEYGVLALCGVHDAEAKPVLLCS 370
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 36.7 bits (81), Expect = 0.019
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +1
Query: 277 SYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLL 456
S+++RL+ T + + + I ++ ++ +S V H + V + +
Sbjct: 36 SHVNRLEITPDKHYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNNVMA--VGFQCDAKWM 93
Query: 457 YSTGLDGLVKLWDIRAGGSCVLEYK 531
YS DG VK+WD+RA G C EY+
Sbjct: 94 YSGSEDGTVKIWDLRAPG-CQKEYE 117
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 36.7 bits (81), Expect = 0.019
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 217 EQMFSKKYKIVTEHAVSLL--HS-YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 387
+ M+ + Y T V + HS YI + +L +S SD+ + KL D C
Sbjct: 77 DDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDML--IKLWDWENGWAC 134
Query: 388 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDI 498
GH + QVVF+PK+ N S LD +K+W++
Sbjct: 135 TQIFEGHSHYVM-QVVFNPKDTNTFASASLDRTIKIWNL 172
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 36.7 bits (81), Expect = 0.019
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 217 EQMFSKKYKIVTEHAVSLL--HS-YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 387
+ M+ + Y T V + HS YI + +L +S SD+ + KL D C
Sbjct: 77 DDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDML--IKLWDWENGWAC 134
Query: 388 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDI 498
GH + QVVF+PK+ N S LD +K+W++
Sbjct: 135 TQIFEGHSHYVM-QVVFNPKDTNTFASASLDRTIKIWNL 172
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 36.7 bits (81), Expect = 0.019
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 217 EQMFSKKYKIVTEHAVSLL--HS-YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 387
+ M+ + Y T V + HS YI + +L +S SD+ + KL D C
Sbjct: 77 DDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDML--IKLWDWENGWAC 134
Query: 388 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDI 498
GH + QVVF+PK+ N S LD +K+W++
Sbjct: 135 TQIFEGHSHYVM-QVVFNPKDTNTFASASLDRTIKIWNL 172
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 36.3 bits (80), Expect = 0.025
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 513
D +++I+ +SD S + GH + L + + S G DGL+KLW++
Sbjct: 562 DKTVKIWAISDGSCLKT--FEGHTSSVLRASFIT--DGTQFVSCGADGLLKLWNVNT-SE 616
Query: 514 CVLEYKDEEEEI 549
C+ Y E+++
Sbjct: 617 CIATYDQHEDKV 628
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 397 GHKEATLTQVVFSPKED-NLLYSTGLDGLVKLWDIRA 504
GHK ++ ++F P + N+L S D V++WD+ A
Sbjct: 142 GHK-GVVSSILFHPDSNKNILISGSDDATVRVWDLNA 177
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 391 LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 510
L GH++ ++ V +S + +LY+ G DG ++ WDIR G
Sbjct: 186 LSGHRDGVMS-VEWSTSSEWVLYTGGCDGAIRFWDIRRAG 224
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 391 LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 510
L GH++ ++ V +S + +LY+ G DG ++ WDIR G
Sbjct: 186 LSGHRDGVMS-VEWSTSSEWVLYTGGCDGAIRFWDIRRAG 224
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 35.9 bits (79), Expect = 0.034
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +1
Query: 271 LHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDS--SLHQVCRLHGHKEATLTQVVFSPKE 444
+HS +GTK LA D + I+ + S + L GH ++ + Q+ + PK
Sbjct: 23 VHSVAWNSNGTK---LASGSVDQTARIWNIEPHGHSKAKDLELKGHTDS-VDQLCWDPKH 78
Query: 445 DNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDD 624
+L+ + D V+LWD R+ G C + + E I Y+ +G + G++ DD
Sbjct: 79 SDLVATASGDKSVRLWDARS-GKCTQQVELSGENINITYK-----PDGTHVAVGNR--DD 130
Query: 625 DAYLVFFDXRKPXPL 669
+ L D RK PL
Sbjct: 131 E--LTILDVRKFKPL 143
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.9 bits (79), Expect = 0.034
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKE-ATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 510
D + +Y + QV + HG E +T + FS L + +WD G
Sbjct: 207 DGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLG- 265
Query: 511 SCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
VL+ +++ C+ +S +G LCTGS
Sbjct: 266 EVVLDLGLQQDSHRNRISCLGLSADGSALCTGS 298
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 35.9 bits (79), Expect = 0.034
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKE-ATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 510
D + +Y + QV + HG E +T + FS L + +WD G
Sbjct: 269 DGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLG- 327
Query: 511 SCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
VL+ +++ C+ +S +G LCTGS
Sbjct: 328 EVVLDLGLQQDSHRNRISCLGLSADGSALCTGS 360
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 35.9 bits (79), Expect = 0.034
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Frame = +1
Query: 217 EQMFSKKYKIVTEHAVSLLHS---YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 387
+ MF + Y T + + + YI + +L +S SD+ + KL D +C
Sbjct: 77 DDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDML--IKLWDWEKGWLC 134
Query: 388 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDI 498
GH + QV F+PK+ N S LD +K+W++
Sbjct: 135 TQIFEGHSHYVM-QVTFNPKDTNTFASASLDRTIKIWNL 172
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 35.5 bits (78), Expect = 0.044
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 292 LDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGL 471
L +KS +L S D ++ ++ LS + +V H + +T + F+P +DN S L
Sbjct: 474 LSWSKSQHLLSSSMDKTVRLWDLSSKTCLKV---FSHSDY-VTCIQFNPVDDNYFISGSL 529
Query: 472 DGLVKLWDI 498
D V++W I
Sbjct: 530 DAKVRIWSI 538
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 35.5 bits (78), Expect = 0.044
Identities = 30/98 (30%), Positives = 47/98 (47%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA SD +++I+ + Q + GH T + F+P + + S GLD +VK+WD
Sbjct: 115 LASGSSDANLKIWDIRKKGCIQTYK--GHSRGIST-IRFTP-DGRWVVSGGLDNVVKVWD 170
Query: 496 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
+ A G + E+K E P +D +L TGS
Sbjct: 171 LTA-GKLLHEFKFHE----GPIRSLDFHPLEFLLATGS 203
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 35.5 bits (78), Expect = 0.044
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Frame = +1
Query: 217 EQMFSKKYKIVTEHAVSLL--HS-YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 387
+ M+ + Y T V + HS YI + +L +S SD+ + KL D C
Sbjct: 77 DDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDML--IKLWDWEKGWAC 134
Query: 388 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDI 498
GH + QV F+PK+ N S LD +K+W++
Sbjct: 135 TQIFEGHSHYVM-QVTFNPKDTNTFASASLDRTIKIWNL 172
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 35.5 bits (78), Expect = 0.044
Identities = 30/98 (30%), Positives = 45/98 (45%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA SD ++ ++ Q + GH T + FSP + + S GLD +VK+WD
Sbjct: 64 LASGSSDTNLRVWDTRKKGCIQTYK--GHTRGIST-IEFSP-DGRWVVSGGLDNVVKVWD 119
Query: 496 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
+ A G + E+K E P +D +L TGS
Sbjct: 120 LTA-GKLLHEFKCHE----GPIRSLDFHPLEFLLATGS 152
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 35.1 bits (77), Expect = 0.059
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 319 AISLSDNSIEIYKLSDS-SLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
++ +S ++ KL D+ S ++C LHGHK L+ V + N L + D ++KL+D
Sbjct: 281 SLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLS--VKWNQNGNWLLTASKDQIIKLYD 338
Query: 496 IR 501
IR
Sbjct: 339 IR 340
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/88 (31%), Positives = 40/88 (45%)
Frame = +1
Query: 448 NLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDD 627
+LL S G D LVKLWD R+G + + +L + + NG L T S+ D
Sbjct: 281 SLLVSGGKDQLVKLWDTRSGRE-LCSLHGHKNIVL----SVKWNQNGNWLLTASK----D 331
Query: 628 AYLVFFDXRKPXPLGGYWNSHTDDVTXI 711
+ +D R L + HT DVT +
Sbjct: 332 QIIKLYDIRTMKELQSF-RGHTKDVTSL 358
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 35.1 bits (77), Expect = 0.059
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +1
Query: 430 FSPKEDNLLYSTGLDGLVKLWDIRAGG-SCVLEYKDEEEEILR--PYECMDVSCNGIVLC 600
FSP + L S+ +DG +++WD +G L+Y+ +E ++ P C+D S + +L
Sbjct: 221 FSP-DGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLA 279
Query: 601 TGSQ 612
+GSQ
Sbjct: 280 SGSQ 283
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 34.7 bits (76), Expect = 0.078
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 367 SSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEE 546
S+ + V +++GHK T + FSP + L + G DG+VK+W I S + + ++E
Sbjct: 186 SAAYMVQKINGHKGKIWT-LKFSP-DGKYLATGGEDGVVKIWRITLSDSLLASFLRQQEP 243
Query: 547 I 549
I
Sbjct: 244 I 244
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRL-HGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 492
LA+SL++NS+E Y L S + + H + + V S EDN L + VK+W
Sbjct: 375 LALSLNNNSLEFYSLKSSENAKTVTIEHQGHRSDVRSVTLS--EDNTLLMSTSHSEVKIW 432
Query: 493 DIRAGGSCV 519
+ + GSC+
Sbjct: 433 N-PSTGSCL 440
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/92 (28%), Positives = 39/92 (42%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 513
D +++I+ L H+ HG + V + + L+S G D LVK WD
Sbjct: 603 DKNLKIWGLDFGDCHKSIFAHGDSVMGVKFV----RNTHYLFSIGKDRLVKYWDADK-FE 657
Query: 514 CVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
+L + EI C+ +S G L TGS
Sbjct: 658 HLLTLEGHHAEIW----CLAISNRGDFLVTGS 685
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 33.9 bits (74), Expect = 0.14
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 394 HGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMD 573
HGH++ T+ V FSP S G D + LWD R G + V + + + L C+D
Sbjct: 289 HGHED-TVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADL---HCVD 344
Query: 574 VS-CNGIVLCTGSQLVDDDAYLVFFDXRK 657
+ + ++ TGS D + FD RK
Sbjct: 345 WNPHDDNLILTGSA----DNTVRLFDRRK 369
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +1
Query: 331 SDNSIEIY---KLSDSSLHQ-VCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
+DN++ ++ KL+ + + + + GHK A L V +SP + ++ S+ DGL+ +WD
Sbjct: 358 ADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLC-VQWSPDKSSVFGSSAEDGLLNIWD 415
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 513
D +I+++ L + L + L H ++ + + D L S LD VK+W GG+
Sbjct: 293 DKTIKVWSLDN--LQCIQTLTDHSSVVMSLICW----DQFLLSCSLDNTVKIWAAIEGGN 346
Query: 514 CVLEYKDEEEE-ILRPYECMDVSCNGIVLC 600
+ Y +EE +L D ++LC
Sbjct: 347 LEVTYTHKEEHGVLALCGVHDAEAKPVLLC 376
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 33.5 bits (73), Expect = 0.18
Identities = 27/95 (28%), Positives = 46/95 (48%)
Frame = +1
Query: 331 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 510
SD I Y L+ ++ + R H + + T +V+S ++ ++ STG D +K WD R
Sbjct: 73 SDGFIRRYDLNAGTVDTIGR---HDDIS-TSIVYSYEKGEVI-STGFDEKIKFWDTRQRE 127
Query: 511 SCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQL 615
S V D + C+ VS N +V+C + +
Sbjct: 128 SLVFS-TDAGGAV----GCVTVSGNNLVVCVDASM 157
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 33.5 bits (73), Expect = 0.18
Identities = 27/95 (28%), Positives = 46/95 (48%)
Frame = +1
Query: 331 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 510
SD I Y L+ ++ + R H + + T +V+S ++ ++ STG D +K WD R
Sbjct: 73 SDGFIRRYDLNAGTVDTIGR---HDDIS-TSIVYSYEKGEVI-STGFDEKIKFWDTRQRE 127
Query: 511 SCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQL 615
S V D + C+ VS N +V+C + +
Sbjct: 128 SLVFS-TDAGGAV----GCVTVSGNNLVVCVDASM 157
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 415 LTQVVFSPKEDNLLYSTGLDGLVKLWDI 498
+T V F+P +DN S +DG V++WD+
Sbjct: 365 VTCVAFNPVDDNYFISGSIDGKVRIWDV 392
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 415 LTQVVFSPKEDNLLYSTGLDGLVKLWDI 498
+T V F+P +DN S +DG V++WD+
Sbjct: 365 VTCVAFNPVDDNYFISGSIDGKVRIWDV 392
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +1
Query: 301 TKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGL 480
T + S +D + + ++ ++ + RL G + ++ P + N+ YS G DG
Sbjct: 110 TDDRTIITSGADGQVRLGQILENGKVETKRL-GRHHGRVYKLAVLPGDPNVFYSCGEDGF 168
Query: 481 VKLWDIRAGGSCVLEY 528
V+ +DIR+ + ++ Y
Sbjct: 169 VQHFDIRSNSATMVLY 184
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 301 TKSLNLAISLSDNSIEIYKLSDSSLHQVC-RLHGHKEATLTQVVFSPKEDNLLYSTGLDG 477
+KS +L S D ++ ++ LS Q C ++ H + +T + F+P +D S LD
Sbjct: 522 SKSQHLLSSSMDKTVRLWNLSS----QTCLKVFSHSDY-VTCIQFNPVDDRYFISGSLDA 576
Query: 478 LVKLWDI 498
V++W I
Sbjct: 577 KVRVWSI 583
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 33.1 bits (72), Expect = 0.24
Identities = 22/86 (25%), Positives = 42/86 (48%)
Frame = +1
Query: 292 LDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGL 471
L +KS L S D ++ ++ + + +L H + +T + FSP ++N S L
Sbjct: 512 LSWSKSQLLLSSSMDKTVRLWDIETKTC---LKLFAHNDY-VTCIQFSPVDENYFLSGSL 567
Query: 472 DGLVKLWDIRAGGSCVLEYKDEEEEI 549
D +++W I+ V+E+ D E +
Sbjct: 568 DAKIRIWSIQ--DRHVVEWSDLHEMV 591
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 507
D +++++ LS+ L L GH T V SP + +L S G DG+V LWD+ G
Sbjct: 173 DKTVKVWNLSNCKLRST--LAGHTGYVST-VAVSP-DGSLCASGGKDGVVLLWDLAEG 226
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 32.7 bits (71), Expect = 0.31
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 313 NLAISLS-DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 489
N +S S D ++ ++K+ + V + + +T V F+P +N S +DG V++
Sbjct: 340 NYLLSASMDKTVRLWKVGSNDCLGVFAHNSY----VTSVQFNPVNENYFMSGSIDGKVRI 395
Query: 490 WDIRAGGSCVLEYKDEEEEI 549
W+I G V+++ D ++ I
Sbjct: 396 WNI--SGCSVVDWADLKDII 413
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 32.7 bits (71), Expect = 0.31
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 394 HGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMD 573
+GHK+ T+ V F P S G D + LWD R G S ++ + + L C+D
Sbjct: 278 NGHKD-TVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADL---HCVD 333
Query: 574 VS--CNGIVLCTGS 609
+ N ++L TGS
Sbjct: 334 WNPHDNNLIL-TGS 346
Score = 31.5 bits (68), Expect = 0.72
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +1
Query: 331 SDNSIEIY---KLSDSSLHQ-VCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
+DN++ ++ L+ + + V + GH+ A L V +SP + ++ S+ DGL+ +WD
Sbjct: 347 ADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLC-VQWSPDKSSVFGSSAEDGLLNIWD 404
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 32.7 bits (71), Expect = 0.31
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 313 NLAISLS-DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 489
N+ +S S D ++ I+ ++ +V H +T V F+ ++ +L+ S+ DGL ++
Sbjct: 126 NMIVSGSFDETVRIWDVTTGKCLKVLPAHSDP---VTAVDFN-RDGSLIVSSSYDGLCRI 181
Query: 490 WDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
WD G CV D+E P + S NG + G+
Sbjct: 182 WD-SGTGHCVKTLIDDENP---PVSFVRFSPNGKFILVGT 217
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 32.7 bits (71), Expect = 0.31
Identities = 33/117 (28%), Positives = 50/117 (42%)
Frame = +1
Query: 364 DSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEE 543
D L+ + GH E+ + V + K +NL S G DG + +WD R + K E
Sbjct: 204 DKVLNAMFVYEGH-ESAIADVSWHMKNENLFGSAGEDGRLVIWDTRT-NQMQHQVKVHER 261
Query: 544 EILRPYECMDVSCNGIVLCTGSQLVDDDAYLVFFDXRKPXPLGGYWNSHTDDVTXIK 714
E+ Y + N VL T S D+ + FD RK +SH +V ++
Sbjct: 262 EV--NYLSFN-PFNEWVLATAS----SDSTVALFDLRKLNAPLHVMSSHEGEVFQVE 311
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 313 NLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 492
+ +SL D +++ + S L +H H ++ ++ + ++ NLL + D VKLW
Sbjct: 315 SFVVSLKDGTVKGFDTRASDLSPSFIIHAH-DSEVSSISYNIHAPNLLATGSADESVKLW 373
Query: 493 DI 498
D+
Sbjct: 374 DL 375
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 507
D +++++ L + L L GH L V SP + +L S G DG++ LWD+ G
Sbjct: 172 DKTVKVWNLQNCKLRNT--LAGHS-GYLNTVAVSP-DGSLCASGGKDGVILLWDLAEG 225
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 32.3 bits (70), Expect = 0.41
Identities = 28/97 (28%), Positives = 45/97 (46%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA S D +++++ + + + L+GH A + +V FSP +L+ S D V LWD
Sbjct: 208 LATSSVDKTVKVWDVRSYRV-PLAVLNGHGYA-VRKVKFSPHRRSLIASCSYDMSVCLWD 265
Query: 496 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTG 606
+ V Y D E + M V G++ TG
Sbjct: 266 YMVEDALVGRY-DHHTEFAVGID-MSVLVEGLMASTG 300
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/63 (20%), Positives = 35/63 (55%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 513
D++++++ + + + + H + + Q V++PK ++ S D +++WD+R GS
Sbjct: 128 DDTVKLWAMDRPASVRTFKEHAY---CVYQAVWNPKHGDVFASASGDCTLRIWDVREPGS 184
Query: 514 CVL 522
++
Sbjct: 185 TMI 187
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 31.9 bits (69), Expect = 0.55
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Frame = +1
Query: 277 SYIHRLDGTKSLNLAIS---LSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKED 447
S+ LD L+ + S LS + + +L D +L H + +T V F+P ++
Sbjct: 514 SFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHNDY-VTCVQFNPLDE 572
Query: 448 NLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEI 549
+ S LD +++W+I V+E+ D +E +
Sbjct: 573 DYFISGSLDAKIRIWNI--SNRQVVEWNDLKEMV 604
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 31.5 bits (68), Expect = 0.72
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Frame = +1
Query: 424 VVFSPKEDNLLYSTGLDGLVKLWD--IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVL 597
V FSP + ++ S G+D + +D R SC+ Y+ P+ + NG +L
Sbjct: 228 VCFSPSNEKIIASVGMDKKLYTYDSGSRRSSSCI-AYE-------APFSSLAFGDNGYIL 279
Query: 598 CTGSQLVDDDAYLVFFDXR-KPXPLGG-YWNSHTDDVTXI 711
G+ + +VF+D R KP P+ + S+++DVT +
Sbjct: 280 VAGT----SNGRVVFYDIRGKPQPVTVLHAFSNSEDVTSL 315
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 313 NLAISLSDNSIEIYKLSDSSL-----HQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDG 477
+ +SL D +++ + + +S+ + ++GH EA T V ++ NLL + D
Sbjct: 334 SFVVSLEDGTVKGFDVRQASISASESNPSFTINGHDEAA-TSVSYNISAPNLLATGSKDR 392
Query: 478 LVKLWDI 498
VKLWD+
Sbjct: 393 TVKLWDL 399
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA D +++++ LS++ + H L + FSP LL G+ G +KLWD
Sbjct: 385 LATGSKDRTVKLWDLSNNEPSCIAT-HNPNAGGLFFIAFSPDNPFLLAMGGVMGELKLWD 443
Query: 496 IRAGGSCVLEYKDEE 540
+ + Y E
Sbjct: 444 TLSDTNVSSRYGSRE 458
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 334 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 507
D +++++ L + L L GH L V SP + +L S G DG++ LWD+ G
Sbjct: 172 DKTVKVWNLQNCKLRN--SLVGHS-GYLNTVAVSP-DGSLCASGGKDGVILLWDLAEG 225
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
L +S + + I +Y S L Q + H P + + + G D L+K+WD
Sbjct: 424 LGVSFTKHLIHVYAYQGSDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD 483
Query: 496 I 498
+
Sbjct: 484 L 484
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 346 EIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKED-NLLYSTGLDGLVKLW 492
++ K+ D S ++ GH EA + + KE+ ++ST LDG +K W
Sbjct: 477 KLIKVWDLSGKKLFTFEGH-EAPVYSICPHQKENIQFIFSTALDGKIKAW 525
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 31.5 bits (68), Expect = 0.72
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +1
Query: 268 LLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKED 447
++ S R DG +L A LS ++++ + + + R H + + V P +D
Sbjct: 95 VVSSVCFRSDG--ALFAACDLS-GVVQVFDIKERMALRTLRSH----SAPARFVKYPVQD 147
Query: 448 NL-LYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
L L S G DG+VK WD+ G+ V+ ++ +R +C V N +L TGS
Sbjct: 148 KLHLVSGGDDGVVKYWDV--AGATVISDLLGHKDYVRCGDCSPV--NDSMLVTGS 198
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 451 LLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQ 612
L S GLD L ++WD+R G S +L ++ ++P ++ S NG L +G +
Sbjct: 395 LAASCGLDSLARVWDLRTGRS-ILVFQGH----IKPVFSVNFSPNGYHLASGGE 443
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 31.1 bits (67), Expect = 0.96
Identities = 21/80 (26%), Positives = 42/80 (52%)
Frame = +1
Query: 310 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 489
L+LAI L ++ ++++ + QV L G E+ + + ++ +++L + G+DG +
Sbjct: 147 LDLAIGLDNSEVQLWDCVSN--RQVRTLRGGHESRVGSLAWN---NHILTTGGMDGKIVN 201
Query: 490 WDIRAGGSCVLEYKDEEEEI 549
D+R S V Y EE+
Sbjct: 202 NDVRIRSSIVETYLGHTEEV 221
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 31.1 bits (67), Expect = 0.96
Identities = 20/80 (25%), Positives = 42/80 (52%)
Frame = +1
Query: 310 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 489
L+LA+ L ++ ++++ + QV L G E+ + + + ++++L + G+DG +
Sbjct: 181 LDLAVGLDNSEVQLWDCVSN--RQVRTLRGGHESRVGSLAW---DNHILTTGGMDGKIVN 235
Query: 490 WDIRAGGSCVLEYKDEEEEI 549
D+R S V Y EE+
Sbjct: 236 NDVRIRSSIVETYLGHTEEV 255
>At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40
repeats (PF00400); low similarity to MEK kinase alpha
(GI:4028547); transcriptional repressor TUP1
(GI:3406654) [Dictyostelium discoideum]; Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (TGF-beta receptor interacting protein 1)
(TRIP-1) (SP:Q38884) [Arabidopsis thaliana]
Length = 442
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 415 LTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILR 555
L+ V + ED+ ++S G+V +WD RAG S +E + + ++
Sbjct: 153 LSDVAITSDEDSRIFSPDTLGMVHVWDRRAGVSPCIELSTDRYDSIK 199
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
+A + +I+++ L ++ + V L GH+ ++ V F P + S LD +K+WD
Sbjct: 74 VAAGAASGTIKLWDLEEAKI--VRTLTGHRSNCIS-VDFHPFGE-FFASGSLDTNLKIWD 129
Query: 496 IRAGGSCVLEYK 531
IR G C+ YK
Sbjct: 130 IRKKG-CIHTYK 140
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
+A + +I+++ L ++ + V L GH+ ++ V F P + S LD +K+WD
Sbjct: 74 VAAGAASGTIKLWDLEEAKI--VRTLTGHRSNCIS-VDFHPFGE-FFASGSLDTNLKIWD 129
Query: 496 IRAGGSCVLEYK 531
IR G C+ YK
Sbjct: 130 IRKKG-CIHTYK 140
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/79 (30%), Positives = 41/79 (51%)
Frame = +1
Query: 295 DGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLD 474
D ++ L +A + +I+++ L ++ + V L GH+ + V F P + S LD
Sbjct: 161 DASEGL-VAAGAASGTIKLWDLEEAKV--VRTLTGHR-SNCVSVNFHPFGE-FFASGSLD 215
Query: 475 GLVKLWDIRAGGSCVLEYK 531
+K+WDIR G C+ YK
Sbjct: 216 TNLKIWDIRKKG-CIHTYK 233
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Frame = +1
Query: 313 NLAISLSDNSIEIYKL------SDSSLHQVCRLHGH-KEATLTQVVFSPKEDNLLYSTGL 471
+ +SL D +++ + + SDS L+ + H ++ ++ + ++ NLL + +
Sbjct: 366 SFVVSLEDGTVKGFDIRAAQSGSDSDLNPTYTIQAHAQDRGVSSISYNISTPNLLATGSM 425
Query: 472 DGLVKLWDIRAG-GSCVLEYK 531
D VKLWD+ SC+ ++
Sbjct: 426 DKSVKLWDLSNNEPSCIATHQ 446
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 400 HKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEI 549
H E+ L + ++ + N+L S D VK+WD+ A G+C + + +E+
Sbjct: 264 HTESVLG-LAWNKEFRNILASASADKKVKVWDV-ATGTCKITMEHHTKEV 311
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +1
Query: 265 SLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKE 444
SL+ HR++G LA D I +Y + +L V GH + +T + FS ++
Sbjct: 517 SLVKIVYHRVNGL----LATVADDFVIRLYDVV--TLKMVREFRGHTDR-ITDLCFS-ED 568
Query: 445 DNLLYSTGLDGLVKLWDI 498
+ S+ +DG +++WD+
Sbjct: 569 GKWVISSSMDGSLRIWDV 586
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 391 LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDI 498
L GH +A +T + +S +LL S GLDG V +W++
Sbjct: 156 LTGHTKA-VTAIDWSTSHVHLLASAGLDGAVYVWNV 190
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 403 KEATLTQVV-FSPKEDNLLYSTGLDGLVKLWDIRA 504
KE + VV F P N+ S G G ++LWDIRA
Sbjct: 244 KEDEVVGVVKFHPDNCNVFLSGGSKGSLRLWDIRA 278
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/84 (30%), Positives = 39/84 (46%)
Frame = +1
Query: 250 TEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVV 429
T H SL+ S + L+ T +S+ DN I Y GHK+ ++ +
Sbjct: 75 THHPSSLICSSRYNLESTGESLRYLSMYDNRILRY------------FKGHKDRVVS-LC 121
Query: 430 FSPKEDNLLYSTGLDGLVKLWDIR 501
SP D+ + S LD V+LWD+R
Sbjct: 122 MSPINDSFM-SGSLDRSVRLWDLR 144
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
L + D +I+++ + ++ V L GH T+ + P +LL S DG LWD
Sbjct: 143 LLTASGDQTIKVWDVEENKCTGV--LIGHT-GTVKSMCSHPTNSDLLVSGSRDGCFALWD 199
Query: 496 IRAGGS 513
+R S
Sbjct: 200 LRCKSS 205
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 241 KIVTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQ-VCRLHGHKEATL 417
KI T H+ +H + G + +A + SD +I+I +S+S Q + L GH+ +
Sbjct: 5 KIETGHS-DTIHDVVMDYYGKR---VATASSDCTIKITGVSNSGGSQHLATLTGHR-GPV 59
Query: 418 TQVVFS-PKEDNLLYSTGLDGLVKLW 492
QV ++ PK +LL S DG + LW
Sbjct: 60 WQVAWAHPKFGSLLASCSYDGQIILW 85
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 376 HQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 507
H ++ + L ++ P + L ++ LDG+V LW ++ G
Sbjct: 186 HTSNQISSQHKRKLRSLILCPVNEQLFATSSLDGMVSLWQLQPG 229
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 376 HQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVL--EYKDEEEEI 549
H + + + + + S +LL+S G DG + +W+ GG V+ + E +
Sbjct: 249 HSLVAILSEHNSGINALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESV 308
Query: 550 LRPYECMDVSCNG 588
L D+ C+G
Sbjct: 309 LCLAVVSDILCSG 321
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 373 LHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCV 519
L V L GH + + + P+ + L+S +DG +++WD + G CV
Sbjct: 121 LAMVASLEGHNKEL--KGIALPEGSDKLFSVSIDGTLRVWDCNS-GQCV 166
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 283 IHRLDGTKSLNLAISLSDNSIEIYKLSDSS---LHQVCRLHGHKEATLTQVVFSPKEDNL 453
+H + + A S SI ++K +DS + L GH +T V + +
Sbjct: 269 VHAMTAANGMLFA-GTSSGSILVWKATDSESDPFKYLTSLEGHHSGEVTCFVVGGE---V 324
Query: 454 LYSTGLDGLVKLWDI 498
LYS +D +K+WD+
Sbjct: 325 LYSGSVDKTIKVWDL 339
>At4g23890.1 68417.m03436 expressed protein hypothetical protein,
Synechocystis sp., PIR:S76577
Length = 250
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 400 HKEATLTQVVFSP-KEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYE 564
H+ +T+ + VF P K+ + LY G LW++ G K E+E+ R E
Sbjct: 25 HQFSTVNRSVFPPPKQQSKLYQVKAMGKFNLWEVMGGRGLCNGEKGIEKELQRNIE 80
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRL--HGHKEATLTQVVF--SPK---EDNLLYSTGLD 474
+A + D S+EI+ +S ++ C+L HG + ++ + + SP L+S+ +D
Sbjct: 28 VAAAREDGSLEIWLVSPGAVGWHCQLTIHGDPNSRISSLAWCCSPSIGLPSGRLFSSSID 87
Query: 475 GLVKLWDI 498
G + WD+
Sbjct: 88 GSISEWDL 95
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA + D + +Y++S+ R V +SP + ++S DGL++ WD
Sbjct: 168 LAAACDDGCVRLYRISNLEKLTYYRSLPRVSGRALSVTWSP-DAKRIFSGSSDGLIRCWD 226
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = +1
Query: 280 YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLY 459
+++RL+ T ++ + I ++ L + H R + V F +++Y
Sbjct: 42 HVNRLELTPEKGKLVAACNPHIRLFDLRSYNPHIPVRNFVSHTKNVMAVGFQ-YTGHMMY 100
Query: 460 STGLDGLVKLWDIRAGGSCVLEYK 531
S DG VK+WD+R C E++
Sbjct: 101 SGSEDGSVKIWDLRV-RECQREFR 123
>At2g19230.1 68415.m02245 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 877
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 349 IYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLV--KLWDIRAGGSCVL 522
IY L +H VC + + V+ N +Y T D L+ + WD+ A G
Sbjct: 152 IYTLRSDKVH-VCLVDKERGTPFLSVLELRLLKNNIYETASDSLMLYRRWDLGATGDLPA 210
Query: 523 EYKDE 537
YKD+
Sbjct: 211 RYKDD 215
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 376 HQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 492
+++ L GHKE +T VVFS +D L + D K+W
Sbjct: 97 NKIVVLKGHKEH-VTDVVFSSVDDECLATASTDRTEKIW 134
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 460 STGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQ 612
S+G D L ++WD+R + +L ++ +++L +D S NG L +G +
Sbjct: 147 SSGFDSLARVWDLRTARN-ILIFQGHIKQVL----SVDFSPNGYHLASGGE 192
>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
damage-specific DNA binding protein 2 (GI:10798819)
[Homo sapiens]
Length = 557
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 430 FSPKEDNLLYSTGLDGLVKLWDIRAGGSCVL 522
FSP D+++YS DG + D+ G S L
Sbjct: 223 FSPTNDDMVYSASSDGTIGYTDLETGTSSTL 253
>At5g48850.1 68418.m06043 male sterility MS5 family protein similar
to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
contains Pfam profile PF00515 TPR Domain
Length = 306
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 149 SSTFFKSKNLPMKSLISTVRHLIVC 75
+ST FKSK LP+ IS+ R+ +VC
Sbjct: 282 TSTSFKSKRLPIFEQISSFRNTLVC 306
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/80 (25%), Positives = 42/80 (52%)
Frame = +1
Query: 310 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 489
L+LA+ L ++ ++++ + QV L G E+ + + ++ +++L + G+DG +
Sbjct: 178 LDLAVGLDNSEVQLWDFVSN--RQVRTLIGGHESRVGSLAWN---NHILTTGGMDGKIVN 232
Query: 490 WDIRAGGSCVLEYKDEEEEI 549
D+R S V Y EE+
Sbjct: 233 NDVRIRSSIVGTYLGHTEEV 252
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 331 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIR 501
SD+SI +Y L + + R H T V F+ + NL+ S D L K+WD R
Sbjct: 249 SDDSIYVYDLEANRVS--LRTVAHTSDVNT-VCFADESGNLILSGSDDNLCKVWDRR 302
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDS--SLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 489
+A + D SI+I+ L S + H + +T V FS + +L S DG +K+
Sbjct: 342 IAGGVGDGSIQIWSLKPGWGSRPDIYVGKAHTD-DITSVKFS-SDGRILLSRSFDGSLKV 399
Query: 490 WDIR 501
WD+R
Sbjct: 400 WDLR 403
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 406 EATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 513
E + + F+P+ +++ ++ DG LWD+R+ G+
Sbjct: 348 ERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGA 383
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/98 (23%), Positives = 40/98 (40%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA DN ++++ + + H + +T + F +LL S LDG V+ WD
Sbjct: 364 LATGADDNKVKVWNVMSGTCFITFTEHTN---AVTALHFMADNHSLL-SASLDGTVRAWD 419
Query: 496 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
+ YK R + + +G V+C G+
Sbjct: 420 FKR----YKNYKTYTTPTPRQFVSLTADPSGDVVCAGT 453
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/98 (23%), Positives = 40/98 (40%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA DN ++++ + + H + +T + F +LL S LDG V+ WD
Sbjct: 404 LATGADDNKVKVWNVMSGTCFITFTEHTN---AVTALHFMADNHSLL-SASLDGTVRAWD 459
Query: 496 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
+ YK R + + +G V+C G+
Sbjct: 460 FKR----YKNYKTYTTPTPRQFVSLTADPSGDVVCAGT 493
>At5g37560.1 68418.m04523 zinc finger protein-related contains weak
similarity to zinc fingers and Pfam:PF01485 IBR domain
Length = 408
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +1
Query: 373 LHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEIL 552
L +V RL G +T T V+ + ++DN +D LVK + + K + E +L
Sbjct: 120 LEEVQRLRGRLASTGT-VLVATRDDNFALRLAIDALVKATQEKPLTCSICSDKTDAEHML 178
Query: 553 RPYECMDVSC 582
+C+ C
Sbjct: 179 LNDKCLHRHC 188
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +1
Query: 301 TKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGL 480
+K+ L + DNS+ ++++ + H +T V F+P +D+ S +DG
Sbjct: 365 SKNNRLLSASVDNSVRLWQIG---CEDCLGIFSHNNY-VTSVQFNPVDDDHFISGSIDGK 420
Query: 481 VKLW 492
V++W
Sbjct: 421 VRIW 424
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +1
Query: 301 TKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGL 480
+K+ L + DNS+ ++++ + H +T V F+P +D+ S +DG
Sbjct: 365 SKNNRLLSASVDNSVRLWQIG---CEDCLGIFSHNNY-VTSVQFNPVDDDHFISGSIDGK 420
Query: 481 VKLW 492
V++W
Sbjct: 421 VRIW 424
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 298 GTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDG 477
G K +A D+ + I+ S L + L GH A + V +SP ++L S DG
Sbjct: 498 GYKQAFIASGSEDSQVYIWHRSTGKL--IVELPGHAGA-VNCVSWSPTNLHMLASASDDG 554
Query: 478 LVKLWDI 498
+++W +
Sbjct: 555 TIRIWGL 561
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 448 NLLYSTGLDGLVKLWDIRAG 507
N L S+ DG+VKLWD+ G
Sbjct: 767 NYLASSDYDGIVKLWDVTTG 786
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
+ L SI + ++ ++L + R H + +T + F ++ +LL S LDG V +W
Sbjct: 195 ICYGLKGGSIRVLNIN-TALRSLFRGHSQR---VTDMAFFAEDVHLLASVSLDGKVFVWK 250
Query: 496 IRAG 507
I G
Sbjct: 251 ISEG 254
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 415 LTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 507
+T V FS D + ++ G+D VK+WD+R G
Sbjct: 183 ITAVSFSDAADKI-FTGGVDNDVKVWDLRKG 212
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSS-LHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 492
+A + SD +I+I +S++ Q+ L GH+ PK ++L S DG V LW
Sbjct: 26 IATASSDCTIKITGVSNNGGSQQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILW 85
>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose:salicylic acid
glucosyltransferase [Nicotiana tabacum] GI:7385017;
contains Pfam profiles PF00201: UDP-glucoronosyl and
UDP-glucosyl transferase, PF01535: PPR repeat
Length = 1184
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 328 LSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 507
L NS IY L ++C+L +EA + D ++Y+T +DG K DIRA
Sbjct: 755 LKPNSY-IYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAA 813
Query: 508 GSCVLE 525
E
Sbjct: 814 SKFFYE 819
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/80 (25%), Positives = 43/80 (53%)
Frame = +1
Query: 310 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 489
L+LA+ L ++ ++++ S+ H V L G E+ + + ++ +++L + G+DG +
Sbjct: 165 LDLAVGLDNSEVQVWDCV-SNRH-VRTLRGGHESRVGSLAWN---NHILTTGGMDGKIVN 219
Query: 490 WDIRAGGSCVLEYKDEEEEI 549
D+R S + Y EE+
Sbjct: 220 NDVRIRSSIIGTYVGHTEEV 239
>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (5 copies, 2 below cutoff); related to
LACK protective antigen (GI:13625467) [Leishmania
donovani]
Length = 764
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 337 NSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLL---YSTGLDGLVKLWDIRA 504
N++ +Y ++ ++ L H A +T V+ P D + +++ LDG +++W+ A
Sbjct: 28 NTVSVYSVATGL--KITSLEDHT-APVTSVIVDPSSDETVSYCWTSSLDGKIRIWEFSA 83
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/90 (16%), Positives = 45/90 (50%)
Frame = +1
Query: 232 KKYKIVTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEA 411
K +++++ + +LHS +N + ++S++ + L + +++ + A
Sbjct: 155 KSAEVLSKDSAGMLHSLSGGAWDPHDVNAVAATGESSVQFW-----DLRTMKKVNSIEHA 209
Query: 412 TLTQVVFSPKEDNLLYSTGLDGLVKLWDIR 501
+ V ++PK +++L + + + +WD+R
Sbjct: 210 HVRGVDYNPKREHILVTAEDESGIHVWDLR 239
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA + D++++I ++ L GH+ T V F P+ ++ S LD V+LW+
Sbjct: 118 LASTHGDHTVKIIDCETGKCLKI--LTGHRR-TPWVVRFHPRHSEIVASGSLDHEVRLWN 174
Query: 496 IRAGGSCV 519
+ G C+
Sbjct: 175 AKT-GECI 181
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
LA + D++++I ++ L GH+ T V F P+ ++ S LD V+LW+
Sbjct: 118 LASTHGDHTVKIIDCETGKCLKI--LTGHRR-TPWVVRFHPRHSEIVASGSLDHEVRLWN 174
Query: 496 IRAGGSCV 519
+ G C+
Sbjct: 175 AKT-GECI 181
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 6.8
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Frame = +1
Query: 295 DGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDN-----LLY 459
D T SL LA D++ +I+ + S+ R H + T+ P +N L
Sbjct: 457 DPTGSL-LASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLA 515
Query: 460 STGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 609
S D VKLWD G + + E P + S NG + +GS
Sbjct: 516 SASFDSTVKLWDAEL-GKMLCSFNGHRE----PVYSLAFSPNGEYIASGS 560
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 298 GTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDG 477
G S +A D+ + I+ L ++ +V L GH T+ V ++PK +L S D
Sbjct: 452 GLDSSFIASGSEDSQVYIWNLKNTKPLEV--LSGHS-MTVNCVSWNPKNPRMLASASDDQ 508
Query: 478 LVKLW 492
+++W
Sbjct: 509 TIRIW 513
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSD-SSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 492
+ ++ + + I++Y S + L Q + H A +P + + G D L+K+W
Sbjct: 422 IGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIKVW 481
Query: 493 DI 498
D+
Sbjct: 482 DV 483
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
+A S ++ L ++ R H + +T++V +P E +LL S+ LD +++WD
Sbjct: 427 IAAGFSSGQCRLFDLRENGFISSWRAH---DGYVTKLV-AP-ESHLLVSSSLDKTLRIWD 481
Query: 496 IR 501
+R
Sbjct: 482 LR 483
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 331 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 510
S N + ++ D + +Q+ E + + +S + LL S DG VKLW I G
Sbjct: 551 SSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 610
Query: 511 S 513
S
Sbjct: 611 S 611
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 331 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 510
S N + ++ D + +Q+ E + + +S + LL S DG VKLW I G
Sbjct: 551 SSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 610
Query: 511 S 513
S
Sbjct: 611 S 611
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/79 (20%), Positives = 44/79 (55%)
Frame = +1
Query: 313 NLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 492
++A+ L+++ ++++ +S Q+ L G ++ + + ++ +++L + G+DGL+
Sbjct: 196 HVAVGLNNSEVQLW--DSASNRQLRTLKGGHQSRVGSLAWN---NHILTTGGMDGLIINN 250
Query: 493 DIRAGGSCVLEYKDEEEEI 549
D+R V Y+ +E+
Sbjct: 251 DVRIRSPIVETYRGHTQEV 269
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/79 (20%), Positives = 44/79 (55%)
Frame = +1
Query: 313 NLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 492
++A+ L+++ ++++ +S Q+ L G ++ + + ++ +++L + G+DGL+
Sbjct: 186 HVAVGLNNSEVQLW--DSASNRQLRTLKGGHQSRVGSLAWN---NHILTTGGMDGLIINN 240
Query: 493 DIRAGGSCVLEYKDEEEEI 549
D+R V Y+ +E+
Sbjct: 241 DVRIRSPIVETYRGHTQEV 259
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 367 SSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 495
+S C H + +TQV F P + N L S +DGL+ L++
Sbjct: 161 NSKQVACLEESHMD-DVTQVHFVPNKPNKLLSASVDGLICLFN 202
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = +1
Query: 316 LAISLSDNSIEIYKLS--DS----SLHQVCRLHGHKEATLTQVVFSPKEDN-LLYSTGLD 474
+A DN+I ++ S DS S + + + + E + V +SP E N LL S D
Sbjct: 281 IASGAGDNAIRLFVDSKHDSVDGPSYNLLLKKNKAHENDVNSVQWSPGEGNRLLASASDD 340
Query: 475 GLVKLWDI 498
G+VK+W +
Sbjct: 341 GMVKIWQL 348
>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 851
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/68 (20%), Positives = 33/68 (48%)
Frame = +1
Query: 367 SSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEE 546
++L ++ L ++ ++ K+ +L +G G+ + + G + LEY DE+E
Sbjct: 147 NNLGEITLLGQNRMKWFAYLLSMSKDGSLALGSGWKGICEANGVNTGEAFTLEYIDEQET 206
Query: 547 ILRPYECM 570
+ +C+
Sbjct: 207 AHKTSQCV 214
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,169,575
Number of Sequences: 28952
Number of extensions: 331685
Number of successful extensions: 1107
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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