Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A14
         (893 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49214| Best HMM Match : HSF_DNA-bind (HMM E-Value=2.40042e-42)      31   1.3  
SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 30   2.2  
SB_39790| Best HMM Match : Phage_Gp15 (HMM E-Value=6.1)                29   3.8  
SB_49518| Best HMM Match : DUF1410 (HMM E-Value=4.7)                   29   5.1  
SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)               29   6.7  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_49214| Best HMM Match : HSF_DNA-bind (HMM E-Value=2.40042e-42)
          Length = 284

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 YQEVSNG-PDKDRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAP 421
           Y +V N  PD D  + N IP  D++D D+R  I+D S +      AP
Sbjct: 127 YDDVHNIIPDDDDDVHNIIPDDDDDDDDSRLMIQDSSEQEQAAKRAP 173


>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 519

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +2

Query: 65  PHDDWKSAERPN-YLTNVDLEYPYSELPYIAQY-KLLKLPFTGELIEH 202
           P  D     +P+ Y+ +VDL+Y Y  +P   ++ K+LK  + G+L ++
Sbjct: 285 PKSDAVDMMKPDCYMCSVDLKYAYYSVPIAPEHKKILKFSWRGKLYQY 332


>SB_39790| Best HMM Match : Phage_Gp15 (HMM E-Value=6.1)
          Length = 235

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 50  RHEMDPHDDWKSAERPNYLTNVDLEYPYSELPYIAQYKLLKLPFTGELIEHV 205
           R  + PH   KS  +   L   D EY   +   I QYK +   F   L +H+
Sbjct: 9   RKTLQPHFQAKSPVKLEALKKKDKEYTIDKNAQIVQYKEVHFEFNNSLDDHL 60


>SB_49518| Best HMM Match : DUF1410 (HMM E-Value=4.7)
          Length = 172

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 50  RHEMDPHDDWKSAERPNYLTNVDLEYPYSELPYIAQYKLLKLPFTGELIEHV 205
           R  + PH   KS  +   L   D EY   +   I QYK +   F   L +H+
Sbjct: 9   RKTLQPHFQAKSPVKLEALKKNDKEYTIDKNAQIVQYKEVHFEFNNSLDDHL 60


>SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)
          Length = 486

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 99  LGRSADFQSSCGSISCRPALIIGGQC 22
           LG+ + F+++  SIS RP L + GQC
Sbjct: 378 LGQCSQFKANTRSISIRPILAVLGQC 403


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 295  QQRAGQGSQDPQQNPGARRERLRHPGLHQG*LGQNSDAHERAHHSEQRQRH 447
            QQ+  Q  Q  QQ    ++++ RH    Q     + D  ++ HH +Q+Q H
Sbjct: 1095 QQQHDQQQQHDQQQQHDQQQQQRHDQQQQ-----HHDQQQQQHHDQQQQHH 1140


>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 268 QRKPTVPRGQQRAGQ--GSQDPQQNPGARRERLRHPGL 375
           ++KP  P  ++ A +   ++ PQQ+P   R+R RH  L
Sbjct: 93  EKKPKKPAAKKPAAKKPAAKSPQQSPRRSRQRRRHQSL 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,685,496
Number of Sequences: 59808
Number of extensions: 471687
Number of successful extensions: 1227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)