Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A14
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    31   0.84 
U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    29   5.9  

>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = +2

Query: 83  SAERPNYLTNVDLEYPYSELPYIAQYKLLKLPFTGELIEHVDYWGEGSIVNGGLYSGFRN 262
           S E    LT   L+Y + +L    + K +K+P+T E IE  +Y  + S +NG   + F N
Sbjct: 297 SVENRKNLTKPLLDYYFDKLSSGLEAKGVKMPWTREEIEE-EY--KYSFINGAALTIFAN 353

Query: 263 CYNVNRQYQEVSNGPDKDR 319
            +  N    +    PD  R
Sbjct: 354 GFWANSPVLQTDGKPDPVR 372


>U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical
           protein C56C10.7a protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 460 NDSRNVSGAVRNDGRAHERHYFDRVILDVSPGVAVVLVAHRDSVGDLAILVRP 302
           N +++V    + +  ++   + ++V LD S    V  +AH D  GD+  L++P
Sbjct: 185 NANQDVYLEAQIENTSNANMFLEKVELDPSQHYNVTSIAHEDEFGDVGKLLKP 237


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 20
            protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 319  QDPQQNPGARRERLRHPGLHQG*LGQNSDAHERAHHSEQRQRHYE 453
            Q   Q+PGA      HP +H   L Q+    ++ HH E    H++
Sbjct: 1155 QQQHQHPGAGGHLQLHPQMHMQMLPQHH--QQQQHHEEMMMMHHQ 1197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,111
Number of Sequences: 27780
Number of extensions: 339511
Number of successful extensions: 963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)