Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A14
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02125.1 68416.m00179 hypothetical protein                          29   3.1  
At3g24630.1 68416.m03093 hypothetical protein                          29   5.5  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   5.5  
At5g38150.1 68418.m04598 expressed protein                             28   7.3  
At2g17010.1 68415.m01961 mechanosensitive ion channel domain-con...    28   7.3  

>At3g02125.1 68416.m00179 hypothetical protein
          Length = 355

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 362 RSRSRRAPGFCWGSCDPCPARC 297
           R++S +A   CW SC  CP++C
Sbjct: 330 RTQSLKASRTCWFSCFHCPSKC 351


>At3g24630.1 68416.m03093 hypothetical protein
          Length = 724

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = +2

Query: 272 VNRQYQEVSNGPDKDRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDIT 451
           +N++    +NG +K  K+P R+  +D+   +    ++++  K++ LMS    P++A+ +T
Sbjct: 360 INQRKDHQANGSNK-MKLPLRMTKKDKEPKEMVPKVEENEGKVIKLMS----PSNAKVLT 414

Query: 452 R 454
           R
Sbjct: 415 R 415


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 134 SELPYIAQYKLLKLPFTGELIEHVDY 211
           +E+ +IAQ +LL LP  GEL + ++Y
Sbjct: 22  AEVSFIAQRQLLTLPENGELPDDIEY 47


>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 335 IPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERV 472
           I  RDE  C  +  +++D VKI  L S  +I  S  ++  I  ER+
Sbjct: 294 IRARDETACLGKI-LREDDVKIEKLNSKILIEKSKLEVVSIAEERI 338


>At2g17010.1 68415.m01961 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 779

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +2

Query: 254 FRNCYNVNRQYQEVSNGPDKDRKIPNRIPVRDENDCDTRAYIKDD 388
           FRN +  +  Y+++ +  D+    P  +P+  ++  D    + DD
Sbjct: 3   FRNSFKSHSSYKQIRSPGDQSEPSPEHLPILHDHHPDHSGMVVDD 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,760
Number of Sequences: 28952
Number of extensions: 307829
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)