Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A13
         (1321 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   2.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   5.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   8.9  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 13/47 (27%), Positives = 16/47 (34%)
 Frame = +3

Query: 651 PIRXXSGAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSP 791
           PIR  +  P+ E P P    P       V    PP   P      +P
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTP 111


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 136 KTPPSPLX*RXSRXLPSXPP 195
           +TPP+PL    S  LP  PP
Sbjct: 349 RTPPNPLDAVTSGLLPVRPP 368


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 333 TPXPPPXGXGETGAS 377
           TP PPP   G  G S
Sbjct: 211 TPYPPPGSLGSMGVS 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,284
Number of Sequences: 336
Number of extensions: 2043
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 39049180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)