Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A13
         (1321 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.13 
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.67 
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.67 
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   6.3  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   6.3  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   6.3  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   6.3  
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)                   29   6.3  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   8.3  
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)              29   8.3  

>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 24/83 (28%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
 Frame = +3

Query: 645 PXPIRXXSGAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGP--RXXRXRSPLRGPVVPRX 818
           P PI+     P    PPP  PPP        P   PP   P  +     SP   P     
Sbjct: 675 PIPIQTMVPPPPPPPPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSPAGSPSGTSA 734

Query: 819 GXAPQGRPXAXXRRGXSSGRAXG 887
           G   Q  P      G   G+A G
Sbjct: 735 GNPQQQPPPPGQLPGQQPGQAGG 757


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 32.7 bits (71), Expect = 0.67
 Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
 Frame = +2

Query: 140 PPHHLXTDVX------HGXSPRXPPGXPXQXGXXXGGPAXSCPASTXXRPXXGXXLXPPA 301
           PPH +  DV        G   R PPG P   G   GGP    P S            PP 
Sbjct: 191 PPHMMGDDVPPDMMHGRGMGKRFPPGRPGGPGMPPGGPPPFPPTSDPNMGHHPPISGPPT 250

Query: 302 TXXXG 316
           T   G
Sbjct: 251 TSMSG 255



 Score = 29.1 bits (62), Expect = 8.3
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = +3

Query: 657 RXXSGAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVP-RXGXAPQ 833
           R   G P     PP  PPP     +      PP  GP      + + GP +P   G  PQ
Sbjct: 212 RFPPGRPGGPGMPPGGPPPFPPTSDPNMGHHPPISGP----PTTSMSGPPIPVHHGMPPQ 267

Query: 834 GRP 842
             P
Sbjct: 268 YGP 270


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 32.7 bits (71), Expect = 0.67
 Identities = 25/82 (30%), Positives = 28/82 (34%)
 Frame = +3

Query: 690 PPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVPRXGXAPQGRPXAXXRRGXS 869
           PP   P P  R   ++P   PP  GP       P+R PV      APQG        G  
Sbjct: 301 PPQYMPHPRMRPPTRIP---PPGMGPPPRIPPPPIRAPVDVYPPRAPQGASQTPPYPGSH 357

Query: 870 SGRAXGXLXPRTXAGRSGHXXA 935
             R      P T A   G   A
Sbjct: 358 YSRVPPPDGPYTRALPPGEPYA 379



 Score = 31.1 bits (67), Expect = 2.1
 Identities = 22/65 (33%), Positives = 22/65 (33%)
 Frame = +3

Query: 645 PXPIRXXSGAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVPRXGX 824
           P P     GAP    PPP AP P          R PP   P           P VP  G 
Sbjct: 427 PHPRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPG- 485

Query: 825 APQGR 839
           AP  R
Sbjct: 486 APHPR 490



 Score = 31.1 bits (67), Expect = 2.1
 Identities = 22/65 (33%), Positives = 22/65 (33%)
 Frame = +3

Query: 645 PXPIRXXSGAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVPRXGX 824
           P P     GAP    PPP AP P          R PP   P           P VP  G 
Sbjct: 487 PHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPG- 545

Query: 825 APQGR 839
           AP  R
Sbjct: 546 APHPR 550



 Score = 29.5 bits (63), Expect = 6.3
 Identities = 20/57 (35%), Positives = 20/57 (35%)
 Frame = +3

Query: 669 GAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVPRXGXAPQGR 839
           GAP    PPP AP P          R PP   P           P VP  G AP  R
Sbjct: 425 GAPHPRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPG-APHPR 480


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 21/83 (25%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
 Frame = +3

Query: 645 PXPIRXXSGAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGP--RXXRXRSPLRGPVVPRX 818
           P P    +  P    PP   PPP        P   PP  GP       R P    ++   
Sbjct: 374 PPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPSEGKCGRKPAGARIINGQ 433

Query: 819 GXAPQGRPXAXXRRGXSSGRAXG 887
              P   P     RG S     G
Sbjct: 434 NAQPHSWPWQISLRGRSGFHTCG 456


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 21/83 (25%), Positives = 29/83 (34%)
 Frame = +3

Query: 675 PRXEXPPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVPRXGXAPQGRPXAXX 854
           P  +  PP  P P    +   P   P   GP+     +   GP+ P     P G P    
Sbjct: 190 PPGDMGPPGLPGPQGPQMPPGPPGLPGAPGPKGPPGTN---GPLGPPGDVGPPGNPGGPG 246

Query: 855 RRGXSSGRAXGXLXPRTXAGRSG 923
            +G + G   G   P    G +G
Sbjct: 247 YQG-NHGNPAGPQGPNGLPGPNG 268


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 639 RXPXPIRXXSGAPRXEXPPPX-APPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVP 812
           R P P+R  +     E PPP  APPP  R     P   PP  GP      +  +GP +P
Sbjct: 249 RPPPPMRGPTSG--GEPPPPKNAPPPPKRGSSNPP--PPPTRGPPSNSFTT--QGPPLP 301


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 639 RXPXPIRXXSGAPRXEXPPPX-APPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVP 812
           R P P+R  +     E PPP  APPP  R     P   PP  GP      +  +GP +P
Sbjct: 161 RPPPPMRGPTSG--GEPPPPKNAPPPPKRGSSNPP--PPPTRGPPSNSFTT--QGPPLP 213


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
 Frame = +3

Query: 645 PXPIRXXSGAP--RXEXPPPX----APPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRG-P 803
           P P R  +  P  R   PPP     APPP    +   P   PP    +  R   P RG P
Sbjct: 289 PPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQ--RPPPPSRGAP 346

Query: 804 VVPRXGXAP 830
             P  G AP
Sbjct: 347 PPPSMGMAP 355


>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
          Length = 397

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
 Frame = +3

Query: 675 PRXEXPPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPV-VPRXGXAPQGRPXAX 851
           P    PPP  PPP      + P   PP         + PL  PV  P    A   RP   
Sbjct: 251 PSVPIPPPTKPPPRVAS-RRPPPPLPPPDSSEAQAQQPPLSPPVGKPVVPAALMNRPTRG 309

Query: 852 XRR 860
            RR
Sbjct: 310 ERR 312


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +3

Query: 645 PXPIRXXSGAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGP 803
           P P       PR   PPP  PPP      + P   PP   P   R R P +GP
Sbjct: 469 PPPPMGMYPPPRGFPPPPFGPPP---PFYRGP--PPPRGMPPPPRQRMPSQGP 516


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 291 PPXPPXPLAXXARXTPXPPPXGXG 362
           PP PP PL   A   P PPP G G
Sbjct: 676 PPPPPPPLPGGAAPPP-PPPIGGG 698


>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
          Length = 476

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/62 (27%), Positives = 22/62 (35%)
 Frame = +3

Query: 690 PPPXAPPPXXRXLEKVPXRXPPXXGPRXXRXRSPLRGPVVPRXGXAPQGRPXAXXRRGXS 869
           P P  PP       KV        GP+       L+G   P+    P+G P     +G S
Sbjct: 359 PGPPGPPGRAPPDLKVTREIRGSKGPQGPNGTRGLQGEKGPQGDQGPKGEPGTPGAKGES 418

Query: 870 SG 875
            G
Sbjct: 419 GG 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,590,867
Number of Sequences: 59808
Number of extensions: 291840
Number of successful extensions: 1305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4188142675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)