Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A13
         (1321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.84 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.84
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 666 SGAPRXEXPPPXAPPPXXRXLEKVPXRXPPXXGP 767
           SGAP  +  P  +P    R     P + PP  GP
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 548 PPLXSFXPXXGGXXGXPPS 492
           PP  S  P  GG  G PPS
Sbjct: 39  PPNPSQGPPPGGPPGAPPS 57


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 1117 PPPQTAGXIAPRXXXRAAAGGXRXRPXAXSPGGR 1218
            P P+ +G +A       AA G    P   + GGR
Sbjct: 555  PKPRMSGPVAAVAAAAVAAAGVGGVPVVGAGGGR 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,598
Number of Sequences: 438
Number of extensions: 3496
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45503877
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)