Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A12
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.67 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   0.87 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 829 PKVKLTPRSFSPQPAVSLSGSDPEQVAEQTLVGNVRRPHDPP 704
           PK+K+   S   + AV +S  + +  ++  +  N + P DPP
Sbjct: 432 PKLKIADLSAHDKQAVRMSALNVQPTSKGRITLNSKDPLDPP 473


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect(2) = 0.87
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 433 HGPHSLRGRDSWTPEGS 383
           HG H L G  S  P GS
Sbjct: 138 HGLHGLHGLSSSAPTGS 154



 Score = 21.4 bits (43), Expect(2) = 0.87
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 505 KERNSRDI*SCRRGAGILFPTTACHGPHSLRG 410
           KE+ SR+    RR    L   T  HG H L G
Sbjct: 111 KEQLSREQRFLRRRLEQLTNQTGLHGLHGLHG 142


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 187 FLLRYRCLTHLCLCLPSDILYVYEIW-LNRI 98
           +LL  +CLT +CL   S I+    +W +N+I
Sbjct: 381 YLLGIQCLTVVCLAFWSFIVSTILLWFINKI 411


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 804 RSRPNRPCPCRGRTQSKSQSKPWSGTSVGLTIRXDL 697
           + RP R C   G   SKS +   S T  G  +  +L
Sbjct: 582 KRRPQRACSTTGGVPSKSPTLTHSPTMYGDALNANL 617


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 485 IPRISFFYAETTSVP----ASIGFMGFTMSAKGGITLNYGRRSQTASTVF 622
           I R + +Y     VP    AS+  +GFT+    G  L+ G     + TVF
Sbjct: 227 IRRRTLYYFFNLIVPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVF 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,956
Number of Sequences: 438
Number of extensions: 5428
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)