Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A10
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ...    29   3.9  
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil...    28   9.0  

>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain; this
           cDNA may contain an anomalously spliced intron...will
           require further examination.
          Length = 765

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +1

Query: 439 WQDFQDFT-LRRMFKKYSQLGVAAL-PDDKFQALMRTVSGMESNYATAKICSY---KNES 603
           W  FQD   L+   + +  + V  L P+   QAL R     +S  ++ ++ S    +N S
Sbjct: 93  WAKFQDHKPLKDPSRLFESVVVVGLHPNCDIQALERQYIARKSEGSSGRLRSALVSQNHS 152

Query: 604 KCDLSLEPEITEIFSTSQDP 663
           + + SLEP++  ++   + P
Sbjct: 153 RVEPSLEPQVLLVYPPDKQP 172


>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
           similarity to acyl-CoA oxidase [Arabidopsis thaliana]
           GI:3044214
          Length = 664

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 679 HASTPQGLGSWRIFQLSQAPKIDRIYFHSCTSRSSQW 569
           H S  QGL +   F     PK D+   HS T  SS+W
Sbjct: 142 HGSNVQGLETTATFD----PKTDQFIIHSPTQTSSKW 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,075,931
Number of Sequences: 28952
Number of extensions: 304660
Number of successful extensions: 884
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)