Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A09
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0059 - 394001-394708                                             31   0.93 
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.9  
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533...    29   6.5  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    28   8.6  
05_05_0173 + 22956927-22958615                                         28   8.6  
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576...    28   8.6  

>08_01_0059 - 394001-394708
          Length = 235

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +1

Query: 679 PPXRPTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXRXP 825
           PP   T  PPPRR  P    P  + P  P       PP  S P +   P
Sbjct: 11  PPPPATPPPPPRRAPPPPSPP--IRPPPPPTPRPYAPPPPSHPLAPPPP 57



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +1

Query: 679 PPXRPTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXRXP 825
           PP R    P P    P    PR   P  P+      PP  S P+    P
Sbjct: 20  PPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVPPP 68


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
 Frame = +1

Query: 679 PPXRPTXX----PPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXRXPXXG 834
           PP +P       PPP +  P    P+   P  P A+    PP    PS    P  G
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKG-PPPPPPAKGPPPPPPPKGPSPPPPPPPG 371


>07_03_1147 +
           24349811-24350161,24351031-24351366,24353260-24353376,
           24353585-24353647,24354066-24354139,24354216-24354306,
           24354791-24354850,24355270-24355462,24356242-24356522,
           24357435-24357536,24357664-24357774,24358410-24358475,
           24358562-24358660,24358757-24358788,24359171-24359274,
           24359380-24359507,24359625-24359756,24360051-24360359,
           24360887-24361071,24361161-24361263,24361407-24361552,
           24361748-24361827,24361901-24362103
          Length = 1121

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 679 PPXRPTXXPPPRRXLPXXXXP 741
           PP +PT  PPP R LP    P
Sbjct: 48  PPPQPTLPPPPPRTLPPPPPP 68


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +1

Query: 631  PXLXLXXXTTHXSXEXPPXRPTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPP 792
            P L L         E PP  P+  PP +  LP    P    P  P +     PP
Sbjct: 1130 PPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPP 1183


>05_05_0173 + 22956927-22958615
          Length = 562

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +1

Query: 673 EXPPXRPTXXPPPRRXL-PXXXXPRXLXPXTPAARXXXTPPXXSXPSS 813
           E  P  P   PPP   + P    P    P  P A     PP    P +
Sbjct: 60  ETEPLHPPYSPPPAELVRPPTPLPEPYDPSAPEAHPPYVPPPVPPPEA 107


>03_05_0793 +
           27755704-27756386,27756473-27757274,27757379-27757634,
           27758355-27758566,27760494-27760709
          Length = 722

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 318 RNRQAVVDYCQSTKEAELDSVPIVHMVAVIP 226
           RNR A++D       A LD +P+  M A+IP
Sbjct: 30  RNRSALLDAINGHYAAALDRLPVEEMPALIP 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,991
Number of Sequences: 37544
Number of extensions: 284181
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)