Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_A09
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 38 0.049
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 31 4.2
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 31 4.2
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 31 4.2
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 31 4.2
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 31 4.2
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 31 4.2
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 31 4.2
BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding prote... 31 7.4
BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein. 31 7.4
BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding prote... 31 7.4
AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding prot... 31 7.4
AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein N... 31 7.4
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 37.9 bits (84), Expect = 0.049
Identities = 25/103 (24%), Positives = 30/103 (29%)
Frame = +1
Query: 517 AAXXPVXRFRXAXPXLYPXAPXXXPPXXXXPYXLXAXXPXLXLXXXTTHXSXEXPPXRPT 696
AA P+ P P PP P L + P + + PP P
Sbjct: 277 AALQPMEGMASNQQKALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPP 336
Query: 697 XXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXRXP 825
PPP P P P +PA PP P P
Sbjct: 337 PLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPP 379
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +1
Query: 667 SXEXPPXR----PTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXR 819
S PP R P+ PPPRR PR P P R +P S P R
Sbjct: 549 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 603
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +1
Query: 667 SXEXPPXR----PTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXR 819
S PP R P+ PPPRR PR P P R +P S P R
Sbjct: 549 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 603
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +1
Query: 667 SXEXPPXR----PTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXR 819
S PP R P+ PPPRR PR P P R +P S P R
Sbjct: 558 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 612
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +1
Query: 667 SXEXPPXR----PTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXR 819
S PP R P+ PPPRR PR P P R +P S P R
Sbjct: 549 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 603
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +1
Query: 667 SXEXPPXR----PTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXR 819
S PP R P+ PPPRR PR P P R +P S P R
Sbjct: 558 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 612
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +1
Query: 667 SXEXPPXR----PTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXR 819
S PP R P+ PPPRR PR P P R +P S P R
Sbjct: 547 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 601
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +1
Query: 667 SXEXPPXR----PTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXR 819
S PP R P+ PPPRR PR P P R +P S P R
Sbjct: 547 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 601
>BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/81 (27%), Positives = 23/81 (28%)
Frame = +1
Query: 550 AXPXLYPXAPXXXPPXXXXPYXLXAXXPXLXLXXXTTHXSXEXPPXRPTXXPPPRRXLPX 729
A P P + PP P P L T PP P PP
Sbjct: 392 APPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLR 451
Query: 730 XXXPRXLXPXTPAARXXXTPP 792
PR L P P R PP
Sbjct: 452 GPLPRLLPPGPPPGRPPGPPP 472
>BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein.
Length = 400
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/81 (27%), Positives = 23/81 (28%)
Frame = +1
Query: 550 AXPXLYPXAPXXXPPXXXXPYXLXAXXPXLXLXXXTTHXSXEXPPXRPTXXPPPRRXLPX 729
A P P + PP P P L T PP P PP
Sbjct: 151 APPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLR 210
Query: 730 XXXPRXLXPXTPAARXXXTPP 792
PR L P P R PP
Sbjct: 211 GPLPRLLPPGPPPGRPPGPPP 231
>BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/81 (27%), Positives = 23/81 (28%)
Frame = +1
Query: 550 AXPXLYPXAPXXXPPXXXXPYXLXAXXPXLXLXXXTTHXSXEXPPXRPTXXPPPRRXLPX 729
A P P + PP P P L T PP P PP
Sbjct: 392 APPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLR 451
Query: 730 XXXPRXLXPXTPAARXXXTPP 792
PR L P P R PP
Sbjct: 452 GPLPRLLPPGPPPGRPPGPPP 472
>AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding protein
SNP70 protein.
Length = 641
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/81 (27%), Positives = 23/81 (28%)
Frame = +1
Query: 550 AXPXLYPXAPXXXPPXXXXPYXLXAXXPXLXLXXXTTHXSXEXPPXRPTXXPPPRRXLPX 729
A P P + PP P P L T PP P PP
Sbjct: 392 APPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLR 451
Query: 730 XXXPRXLXPXTPAARXXXTPP 792
PR L P P R PP
Sbjct: 452 GPLPRLLPPGPPPGRPPGPPP 472
>AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein
NpwBP protein.
Length = 641
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/81 (27%), Positives = 23/81 (28%)
Frame = +1
Query: 550 AXPXLYPXAPXXXPPXXXXPYXLXAXXPXLXLXXXTTHXSXEXPPXRPTXXPPPRRXLPX 729
A P P + PP P P L T PP P PP
Sbjct: 392 APPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLR 451
Query: 730 XXXPRXLXPXTPAARXXXTPP 792
PR L P P R PP
Sbjct: 452 GPLPRLLPPGPPPGRPPGPPP 472
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,743,262
Number of Sequences: 237096
Number of extensions: 1584398
Number of successful extensions: 3333
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3226
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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