Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A09
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    31   1.5  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    31   1.5  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    31   1.5  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 333 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 217
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 579 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 616


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 333 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 217
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 579 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 616


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 333 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 217
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 627 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 664


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +1

Query: 679 PPXRPTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXRXP 825
           PP R    PPPR   P    P  + P +P  R   TPP     +  R P
Sbjct: 142 PPPRVPRTPPPRS--PPPRRP-PMTPPSPQRRPPRTPPSPEPRNPPRTP 187


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +1

Query: 679 PPXRPTXXPPPRRXLPXXXXPRXLXPXTPAARXXXTPPXXSXPSSXRXP 825
           P  +PT  P P+  LP    P+   P  PAA     PP    P     P
Sbjct: 318 PSKKPTDKPKPK-DLPKEE-PKPAEPPKPAAPKKWKPPWEEDPDEPEEP 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,994,134
Number of Sequences: 27780
Number of extensions: 227644
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)