Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A05
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   200   2e-53
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   200   2e-53
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    82   8e-18
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    72   6e-15
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.73 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  200 bits (487), Expect = 2e-53
 Identities = 93/98 (94%), Positives = 94/98 (95%)
 Frame = +2

Query: 131 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 310
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 311 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGTQRF 424
           DKLKAERERGITIDIALWKFET KYYVTIIDAPG + F
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDF 98



 Score = 69.7 bits (163), Expect = 3e-14
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +3

Query: 414 HRDFIKNMITGTSQADCAVLIVAAGTGDFEAGIS 515
           HRDFIKNMITGTSQADCAVLIVAAG G+FEAGIS
Sbjct: 95  HRDFIKNMITGTSQADCAVLIVAAGIGEFEAGIS 128


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  200 bits (487), Expect = 2e-53
 Identities = 93/98 (94%), Positives = 94/98 (95%)
 Frame = +2

Query: 131 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 310
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 311 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGTQRF 424
           DKLKAERERGITIDIALWKFET KYYVTIIDAPG + F
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 98



 Score = 72.1 bits (169), Expect = 6e-15
 Identities = 33/34 (97%), Positives = 34/34 (100%)
 Frame = +3

Query: 414 HRDFIKNMITGTSQADCAVLIVAAGTGDFEAGIS 515
           HRDFIKNMITGTSQADCAVLIVAAGTG+FEAGIS
Sbjct: 95  HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 81.8 bits (193), Expect = 8e-18
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = +2

Query: 302 WVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGTQRF 424
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPG + F
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 41



 Score = 72.1 bits (169), Expect = 6e-15
 Identities = 33/34 (97%), Positives = 34/34 (100%)
 Frame = +3

Query: 414 HRDFIKNMITGTSQADCAVLIVAAGTGDFEAGIS 515
           HRDFIKNMITGTSQADCAVLIVAAGTG+FEAGIS
Sbjct: 38  HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 71


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 72.1 bits (169), Expect = 6e-15
 Identities = 33/34 (97%), Positives = 34/34 (100%)
 Frame = +3

Query: 414 HRDFIKNMITGTSQADCAVLIVAAGTGDFEAGIS 515
           HRDFIKNMITGTSQADCAVLIVAAGTG+FEAGIS
Sbjct: 22  HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 55



 Score = 48.8 bits (111), Expect = 7e-08
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +2

Query: 350 DIALWKFETXKYYVTIIDAPGTQRF 424
           DIALWKFET KYYVTIIDAPG + F
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDF 25


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 143 KTHINIVVIGHVDSGKST 196
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 152 INIVVIGHVDSGKST 196
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,353
Number of Sequences: 438
Number of extensions: 3703
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)