Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_A04
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 31 0.20
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 29 1.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 1.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 1.9
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 27 2.5
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.8
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 7.7
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 26 7.7
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 499 NCMLRILSVLVRILMAFSNTSAMFTVRLFRASXKEFASFIINWS*FR 359
N L + LV ++AFS SA F + ++AS + S + N+S F+
Sbjct: 272 NSKLGFVGCLVIFVVAFSGFSAYFLLNAYQASVPIYTSMLYNYSSFQ 318
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 366 NSEXPWCIFSFCGFHCKP*KSLQVSWLP 283
N E P C+ +HCKP L V W+P
Sbjct: 666 NVESP-CLMLQHSYHCKPNSKLNVFWMP 692
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -2
Query: 282 RLIW*DFILTSCRISQSSGNRVILRIIRTHLLETQIFC--EISLVRNGIRN*AVKPTESR 109
RLIW + + +S S G + +T++ E C +IS N I + + + TE+
Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424
Query: 108 LVLFKSVIQLIHQIFISRIF 49
+FK+ + + + R F
Sbjct: 425 FTIFKAKLSKVIASVLDRAF 444
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/86 (26%), Positives = 37/86 (43%)
Frame = +3
Query: 309 FTVCNGSHKS*RCTRXTRN*DQLMMKDANSLXDALKSLTVNIAEVLLNAIRILTNTERIR 488
FT +GS + R T N + + S A+ +L + + LN R L +
Sbjct: 213 FTYVDGSELTVRRTAYKNNTSKYFVNGVESSFSAVSNL-LKEKGIDLNHKRFLILQGEVE 271
Query: 489 SIQFGEPLPEDVQAAFDNVLEYIDDI 566
SI + P + D +LEY++DI
Sbjct: 272 SI--AQMKPRAISEGDDGLLEYLEDI 295
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 214 NNTIAGALTYPTRSQDEVLPNQPRQPRNLQGLL 312
++TI+ + PT+ ++ V PN P P + Q LL
Sbjct: 7 SSTISPTFSTPTKKRNLVFPNSPITPLHQQALL 39
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 2.5
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = +3
Query: 465 LTNTERIR----SIQFGEP-LPEDVQAAFDN--VLEYIDDIDTANDFYKMGGFAMFPICY 623
L N+E IR S +P + E+V+AA D V +I + N FY++ G PI +
Sbjct: 124 LGNSEHIRCCHNSFARSDPFISEEVRAATDEDEVYHFIAYTNINNVFYELDGLQAAPINH 183
Query: 624 GS 629
GS
Sbjct: 184 GS 185
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 556 IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 431
+YSR A SSG C+ R+L RIL+ T+++
Sbjct: 1352 LYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASV 1393
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 556 IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 431
+YSR A SSG C+ R L R+L+ T+A+
Sbjct: 1350 LYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAV 1391
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 481 GFVAYSLGNHYQKTYRRLLTMSLNILTILIQQMTSIRWEGL 603
G +A S GNH Q T+ + ++ Q I+W +
Sbjct: 163 GVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNV 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,765
Number of Sequences: 5004
Number of extensions: 55645
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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