Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A04
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12894| Best HMM Match : FH2 (HMM E-Value=1.9)                       30   2.0  
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_12894| Best HMM Match : FH2 (HMM E-Value=1.9)
          Length = 408

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 477 ERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGGFAM 608
           E ++ +   E   E ++ A D +  ++  ID A DF  +GG A+
Sbjct: 192 EHVQVLNSSESTMEQLEHALDELEYFVHQIDNAKDFDTIGGLAI 235


>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/42 (33%), Positives = 28/42 (66%)
 Frame = +1

Query: 166 LTKYLSF*KMSSNNTQNNTIAGALTYPTRSQDEVLPNQPRQP 291
           +T++L+F K  +NN  ++++  A+TY +  +D+ L  +PR P
Sbjct: 2   ITRWLNFRKRRNNNCFSDSLDKAVTY-SSPKDDFLYARPRFP 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,862,098
Number of Sequences: 59808
Number of extensions: 404836
Number of successful extensions: 851
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)