Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A04
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.2  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 107 WFYLKV*SS*FIKYLFLEFLQ 45
           WF+L + SS  + Y+FL F Q
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQ 188


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 107 WFYLKV*SS*FIKYLFLEFLQ 45
           WF+L + SS  + Y+FL F Q
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQ 188


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 107 WFYLKV*SS*FIKYLFLEFLQ 45
           WF+L + SS  + Y+FL F Q
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQ 188


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 513 VVVPQTVCYESFQYW*EF*WR 451
           +++PQ VC+   ++  EF +R
Sbjct: 75  IIMPQDVCFNDLKFIIEFVYR 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,188
Number of Sequences: 438
Number of extensions: 3828
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)