Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A02
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   197   2e-51
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   186   3e-48
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    93   4e-20
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    90   5e-19
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   8.8  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  197 bits (481), Expect = 2e-51
 Identities = 91/143 (63%), Positives = 107/143 (74%), Gaps = 1/143 (0%)
 Frame = +1

Query: 145 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 324
           MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 325 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGSLHHWKGNRXFGXW 504
           +VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARG  H+  G       
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARG--HYTVGKELVDEV 118

Query: 505 TESASSLT-SVPGLQGFLIFHSF 570
           T+    +  +  GLQGFL+FHSF
Sbjct: 119 TDKIRRIADNCSGLQGFLVFHSF 141


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  186 bits (454), Expect = 3e-48
 Identities = 92/148 (62%), Positives = 107/148 (72%), Gaps = 6/148 (4%)
 Frame = +1

Query: 145 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 309
           MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSE
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 310 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGSLHHWKGNR 489
           TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARG  H+  G  
Sbjct: 60  TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARG--HYTVGKE 117

Query: 490 XFGXWTESASSLT-SVPGLQGFLIFHSF 570
                 E    +  +  GLQGFL+FHSF
Sbjct: 118 MIDSVLERIRRMADNCSGLQGFLVFHSF 145


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 93.5 bits (222), Expect = 4e-20
 Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
 Frame = +1

Query: 148 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 327
           RE I++  GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++   ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 328 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGSLHHWKGNRXFGX 501
           +PRA+ +DLEP VV+ + + TY  L++PE ++  K    A NN+A G  H     R F  
Sbjct: 61  IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSH---AERIFED 117

Query: 502 WTESAS-SLTSVPGLQGFLIFHS 567
             +           L+GF + HS
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHS 140


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 89.8 bits (213), Expect = 5e-19
 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
 Frame = +1

Query: 145 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 324
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N +F+E   GK
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 325 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGSLHHWKGNRXFGXW 504
           +VPRAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+G  H+ +G       
Sbjct: 59  YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKG--HYTEGAELADAV 116

Query: 505 TESA-SSLTSVPGLQGFLIFHS 567
            +       +   LQGF + HS
Sbjct: 117 LDVVRREAEACDALQGFQLTHS 138


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 224 STASSLMARCPQTRPSGVETILSTLSSARPELAST 328
           ST SSL +    ++PS   T  ST SSA P   S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 243 WPDAHRQDHRGWRRFFQHFLQR 308
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,081
Number of Sequences: 5004
Number of extensions: 57362
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)