Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A02
         (939 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    50   8e-08
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   0.60 
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    27   0.62 

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 50.4 bits (115), Expect = 8e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +1

Query: 145 MRECISVHVGQAGVQIGNACWE 210
           MRECISVHVGQAGVQIGN CW+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22



 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 26/68 (38%), Positives = 28/68 (41%)
 Frame = +2

Query: 200 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPVXXXXXXXXXXXXXX 379
           P    T WS AS+   RCP+TR S      ST SS R   AST PV              
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPVPCSSIWSRPSSMRC 78

Query: 380 XXAHTDSC 403
             A T SC
Sbjct: 79  APARTASC 86


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect(2) = 0.60
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 251 CPQTRPSGVETILSTLSSARPELAS 325
           C   RPS ++   ++ S  RP+LA+
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAA 188



 Score = 21.8 bits (44), Expect(2) = 0.60
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 194 VMPAGSFTAWSTASSLMARCPQTRPSGV 277
           V+ AG F AW TA        +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 477 ERKSXIWFXDRIRKLADQCTRSARIPDLPLLSVEVPXXGFXSLI 608
           ER+  IWF +R  K     + SA  PDL     E+P     S++
Sbjct: 47  ERQIKIWFQNRRMKAKKDNSASANTPDL-TYDGEIPQQSLESIV 89


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,649
Number of Sequences: 2352
Number of extensions: 16440
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 102535848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)