Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_A02
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.99 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.99 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   9.2  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 564 VEDQESLQTGYTGQRACGFCPXTKXTISF 478
           V  QE    G  G+RA  FC   K T SF
Sbjct: 219 VSPQEERPKGINGRRASLFCGLQKYTRSF 247


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 564 VEDQESLQTGYTGQRACGFCPXTKXTISF 478
           V  QE    G  G+RA  FC   K T SF
Sbjct: 214 VSPQEERPKGINGRRASLFCGLQKYTRSF 242


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 771 PPXGARPXPXXXXLPPXXPPXAPP 842
           P  G+ P P     PP  PP APP
Sbjct: 34  PQRGSPPNPSQGP-PPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 440 RPTTMPVXHYTIGKEIVXLVXGQNP 514
           R  T PV   T+   +V L  G NP
Sbjct: 901 RLVTFPVWQVTLNARLVELSLGSNP 925


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 208 PSRHYRSGLR 179
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 271 RWSCLWASGHQAGCRAPGSKAPSRHYR 191
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 271 RWSCLWASGHQAGCRAPGSKAPSRHYR 191
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 271 RWSCLWASGHQAGCRAPGSKAPSRHYR 191
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 425 LVRKMRPTTMPVXHYTIGKEIV 490
           ++ K    TMP     IGKEIV
Sbjct: 88  MIVKQLEITMPPEEVVIGKEIV 109


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 242 MARCPQTRPSGVETILSTLSSARPE 316
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,756
Number of Sequences: 438
Number of extensions: 5036
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)