Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P24
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.5  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   3.3  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 285 FYFAISTXIRKTEASRLTRVASIFNCITNIAPYNLRN 395
           + F+ ST +RK EA     + ++FN I+    Y+L N
Sbjct: 299 YNFSTSTSLRKREALDGEDIGNVFNSISGCDLYSLSN 335


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 237 IVDQSVT*TNLNFNETFYFAISTXIRKTEAS--RLTRVASIFNCITNIAPYNLRN 395
           IVD  +T  N+N +   +F+    ++  E +   LTR  +    +TN +P +L N
Sbjct: 360 IVDMDITSNNINLSPVSHFSNGLDLQNLEEAPMNLTRPINANPHLTNHSPNDLTN 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,346
Number of Sequences: 5004
Number of extensions: 39842
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)