Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P22
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    30   0.36 
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    28   1.9  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   7.8  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 332 RYHLEQFLRALPMEHTVQNTEGTEVPPQTQ 421
           RY LEQ L+  P+EH +  TE  + PP+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 410 PQTQRFQTIRETGIIDNPNGPPLYGVKWKKLVF 508
           P + R Q +R  G+   PNG P Y  ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 214 RLWNELPSTVFPERYDMSFFKXRLVESIKR 125
           + WN L +T FP++  M+  +  L+ S KR
Sbjct: 403 QFWNALLNTTFPDKKAMAPLQNALLNSKKR 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,636,045
Number of Sequences: 5004
Number of extensions: 83377
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)