Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_P22
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0108 - 5361431-5362405 30 2.0
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 4.7
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 29 4.7
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 29 6.2
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 6.2
08_02_0294 - 15432424-15432669,15433007-15433099,15433168-154332... 28 8.2
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 28 8.2
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 8.2
>10_02_0108 - 5361431-5362405
Length = 324
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 597 YFTPGQRFCFIKHKSGLAWSTAPISGPG 514
YF PG R C +SG AW+ P S G
Sbjct: 200 YFMPGPRLCVFSSRSG-AWTVHPYSDAG 226
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 333 GIISNNSSEHSPWNIRYKIQREPKSLRR 416
G+ SN +E + ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = +1
Query: 295 SGGGRCDGKNEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEVPNDP*DRDYRQS--ER 468
S G ++ + + P P T G G +P+A P P D +
Sbjct: 35 SAAGDAGSDSDAALDPQLPPLRLPASTSG----GGGAPAAPPASPGSSSDSASSSAFVSM 90
Query: 469 PSSVWSQMEEAGIWEPRPRDGSSTPREAG 555
SS + G+W PR D SS+ E G
Sbjct: 91 RSSPSGMLNPYGVWSPRHSDTSSSEMEFG 119
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 689 RHFERCPVSESXEGKAKXRPKXWESSTERSGTSRLDKG 576
RH R P SES +G R + ESS + R D+G
Sbjct: 137 RHRRRSPSSESSDGGRSRRHRRDESSRRQRDERRRDRG 174
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 391 RGNRSPSADPEVPNDP*DRDYRQSERPSSVWSQMEEAGIWEPRPRDGSSTPRE 549
RG++SPS PE P D R SE S+V + E+ + P S P E
Sbjct: 312 RGDKSPSIKPEGAKQP---DQRSSEAASTV-TPFEQLALPAPASSSSSKPPVE 360
>08_02_0294 -
15432424-15432669,15433007-15433099,15433168-15433251,
15434311-15434446,15434601-15434746,15435017-15435242,
15435885-15435967,15436867-15437061,15437148-15437246,
15438237-15438350,15438424-15438511,15438790-15438995,
15439306-15439358,15440473-15440776,15441278-15441366,
15441584-15441958,15442382-15442446,15442945-15442970,
15444007-15444225
Length = 948
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 472 SSVWSQMEEAGIWEPRPRDGSSTPREAGLVLYKAK----PLSRREVPLRSV 612
S V S+ +EAG EP PRD S A V+ A+ L ++P+RS+
Sbjct: 780 SDVVSEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVRSL 830
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 559 VLYKAKPLSRREVPLRSVEDSXHFGRXLALP 651
V+YK PLS + +E+S H G+ L +P
Sbjct: 308 VIYKTFPLSEAAEAHKLMEESSHIGKILLIP 338
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 460 SERPSSVWSQMEEAGIWEPRPRDGSSTPREAGLVLYKAKPLSRREVPLR 606
S PS+ S++E + P P + E V + +PLS++E+ L+
Sbjct: 4 SRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPLSKKELALK 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,033,473
Number of Sequences: 37544
Number of extensions: 655070
Number of successful extensions: 1897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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