Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P22
         (848 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.        32   2.3  
AC074008-1|AAY24208.1| 2557|Homo sapiens unknown protein.              32   2.3  
BC028986-1|AAH28986.1|  458|Homo sapiens UBXD7 protein protein.        31   7.0  
BC004366-1|AAH04366.1|  221|Homo sapiens MGC10334 protein protein.     31   7.0  
AB018337-1|BAA34514.1|  490|Homo sapiens KIAA0794 protein protein.     31   7.0  

>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
          Length = 4169

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
 Frame = +1

Query: 253  WMTAVAPGSMDELYSGGGRCDGKNEMP-VSSRTIPQ-STPHGTYGTKYRGNRSPSADPEV 426
            W  + A     ++ +G G  D K E+P V S + PQ   P   Y      +  P    +V
Sbjct: 1018 WPDSYATEKALKVSTGPGPADQKTEIPAVQSSSYPQREKPSVLYPQVLSDSHLPEESLKV 1077

Query: 427  PNDP*DRDYRQSER--PSSVWSQMEEAGIWEPRPRDGSSTPREA 552
               P   D        PS+ +SQ E+ GI+  +    S  P+EA
Sbjct: 1078 SAFPGPADQMTDTPAVPSTFYSQREKPGIFYQQTLPESHLPKEA 1121


>AC074008-1|AAY24208.1| 2557|Homo sapiens unknown protein.
          Length = 2557

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
 Frame = +1

Query: 253  WMTAVAPGSMDELYSGGGRCDGKNEMP-VSSRTIPQ-STPHGTYGTKYRGNRSPSADPEV 426
            W  + A     ++ +G G  D K E+P V S + PQ   P   Y      +  P    +V
Sbjct: 1016 WPDSYATEKALKVSTGPGPADQKTEIPAVQSSSYPQREKPSVLYPQVLSDSHLPEESLKV 1075

Query: 427  PNDP*DRDYRQSER--PSSVWSQMEEAGIWEPRPRDGSSTPREA 552
               P   D        PS+ +SQ E+ GI+  +    S  P+EA
Sbjct: 1076 SAFPGPADQMTDTPAVPSTFYSQREKPGIFYQQTLPESHLPKEA 1119


>BC028986-1|AAH28986.1|  458|Homo sapiens UBXD7 protein protein.
          Length = 458

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +1

Query: 277 SMDELYSGGGR----CDGKNEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEVPNDP 438
           S  EL+SG       C    E  V +    + +PH   G +   NR P  +P V  DP
Sbjct: 287 SESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKEENRRPLTEPPVRTDP 344


>BC004366-1|AAH04366.1|  221|Homo sapiens MGC10334 protein protein.
          Length = 221

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 376 YGTKYRGNRSPSADPEVPNDP*DRDYRQSERPSSVWSQMEEAGIWEPRPRDGSST 540
           +GT+  G   P A P+    P     + ++ PSS W     +  W P PR G  T
Sbjct: 152 WGTEQEG-LDPVAQPKATRQP-----QPAQPPSSAWGLATGSSQWTPAPRGGRGT 200


>AB018337-1|BAA34514.1|  490|Homo sapiens KIAA0794 protein protein.
          Length = 490

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +1

Query: 277 SMDELYSGGGR----CDGKNEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEVPNDP 438
           S  EL+SG       C    E  V +    + +PH   G +   NR P  +P V  DP
Sbjct: 319 SESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKEENRRPLTEPPVRTDP 376


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,377,125
Number of Sequences: 237096
Number of extensions: 3474100
Number of successful extensions: 9152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9150
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)