Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P21
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (...    30   1.5  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    29   2.7  
At4g16095.1 68417.m02440 disease resistance protein-related cont...    28   8.2  

>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
           (PGMP) / glucose phosphomutase identical to SP|Q9SCY0
           Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
           (Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
          Length = 623

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 582 YIFFLSKIIMWAII*KMLKRSDFVFFLVLRHGVISTYTK-IFXGNXXKVPD 731
           Y+  +  +  + +I  +L RSDF F     H V   Y K IF  N    PD
Sbjct: 253 YLELMEDVFDFDLIRGLLSRSDFGFMFDAMHAVTGAYAKPIFVDNLGAKPD 303


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 674 MAKNQKKNEIASFQHLSYYSPHDNFGKKKNIYIF 573
           + + +KK  I S+ H S Y PH NF  K + +++
Sbjct: 266 LVRRKKKRNIDSYNH-SQYLPHPNFSVKSDGFLY 298


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -1

Query: 468 KISFYPIWGNLPRFPDRCNMPS-----CITWCCMAND 373
           ++ F  +  ++PR PD+   P      C+ +CCM +D
Sbjct: 77  QLKFLTVGMHMPRLPDQHRFPPNLTNICLRYCCMEDD 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,777
Number of Sequences: 28952
Number of extensions: 366218
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)