Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P20
         (803 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2NEJ6 Cluster: Putative uncharacterized protein; n=1; ...    36   0.90 
UniRef50_Q8E2Z4 Cluster: Putative uncharacterized protein gbs196...    36   1.2  
UniRef50_Q05FT2 Cluster: Putative DNA primase; n=1; Candidatus C...    34   4.8  
UniRef50_Q6AEK5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q23J43 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q8PUW6 Cluster: Conserved protein; n=2; Methanosarcina|...    33   8.4  

>UniRef50_Q2NEJ6 Cluster: Putative uncharacterized protein; n=1;
           Methanosphaera stadtmanae DSM 3091|Rep: Putative
           uncharacterized protein - Methanosphaera stadtmanae
           (strain DSM 3091)
          Length = 256

 Score = 36.3 bits (80), Expect = 0.90
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = -3

Query: 279 KKTYSIFNFGTKPTKRTHITRRKLRRPSI*LGCIVGVYWWGIATSAAARLGIETIFNHIK 100
           +KTYSI     K T++ HI   K       LG ++  Y+WG+ T     L   TI +  K
Sbjct: 24  EKTYSIIE--NKNTRKYHIHIEKDET----LGVVIPTYFWGLPTIVEEYLSKLTITSENK 77

Query: 99  NYLVVIRCTYST 64
           N  + I  TY T
Sbjct: 78  NPYIYIITTYGT 89


>UniRef50_Q8E2Z4 Cluster: Putative uncharacterized protein gbs1969;
           n=1; Streptococcus agalactiae serogroup III|Rep:
           Putative uncharacterized protein gbs1969 - Streptococcus
           agalactiae serotype III
          Length = 151

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +3

Query: 333 FRKNVGKFNLLLYNSDIILLGYRNKMIIFKLETSSVKVNISLVVTNK 473
           F +NV  F+ +  +  II++ YRN M I  L   S+K+ ISL+V NK
Sbjct: 92  FTQNVELFSTVK-SGTIIMMEYRNFMQIIMLRIISIKIRISLLVRNK 137


>UniRef50_Q05FT2 Cluster: Putative DNA primase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Putative DNA primase -
           Carsonella ruddii (strain PV)
          Length = 257

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 647 KKRSNRTDAFLSICSYDSAFNTRRFFIAQCCILSSK 754
           KKR N T  FLSI ++D+ FN    FIA+  +L  K
Sbjct: 28  KKRGNTTFKFLSINNFDNLFNKNTLFIARNNLLFKK 63


>UniRef50_Q6AEK5 Cluster: Putative uncharacterized protein; n=1;
           Leifsonia xyli subsp. xyli|Rep: Putative uncharacterized
           protein - Leifsonia xyli subsp. xyli
          Length = 508

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 189 LGCIVGVYWWGIATSAAARLGIETIFNHI 103
           LG ++G +W+G+A  AAA +G  T+F  +
Sbjct: 458 LGILIGPFWFGVAPVAAALIGFVTLFGGV 486


>UniRef50_Q23J43 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 373

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = -2

Query: 544 YKVVTYAIFVNTEMSMRKYIF*WFLLVTTREMFTFTDEVSSLNIIILFL*PSRMISELYN 365
           YKVVTY I ++  ++  KY F + L++  ++ F++T ++   + ++ F   +   SE Y 
Sbjct: 19  YKVVTYLIILDYFLN-EKYYFYFALIIVAQQDFSYTLQIGVYSFVVYFQ-HNNFYSEYYE 76

Query: 364 ----NKLNLPTFFLKNYIICM 314
               N  N PT    + I+ +
Sbjct: 77  PDNANIQNAPTLSSTSRIVLL 97


>UniRef50_Q8PUW6 Cluster: Conserved protein; n=2;
           Methanosarcina|Rep: Conserved protein - Methanosarcina
           mazei (Methanosarcina frisia)
          Length = 383

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 245 FVPKLKIEYVFFFLI-IIRCDNVTHANYVIFQEKRW*IQLVII 370
           FV +    Y+F+F++ I  C N  +    +FQ K+W I  +++
Sbjct: 206 FVDRAFFSYIFYFILGIYLCRNYEYVTDKVFQNKKWIIVTIVV 248


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,438,469
Number of Sequences: 1657284
Number of extensions: 12972558
Number of successful extensions: 23770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23767
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)