Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P20
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.1  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   7.2  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   9.5  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 650 KRSNRTDAFLSICSYDSAFNTRRFFIAQCCILS 748
           K SN T  F+S  SY  A NTR   I +  ILS
Sbjct: 755 KVSNPTKEFVSTSSYAPAANTRNAIIREPGILS 787


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 668 DAFLSICSYDSAFNTRRFFIAQCCILSSKRWALQI 772
           D     CS D+ ++   F +   CIL S+ +  Q+
Sbjct: 76  DVLKPYCSKDNEYSALAFAVIHNCILDSREYRAQV 110


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 577 YIEKQYSHIRFYKVVTYAIFVNTEMSMRKY 488
           ++   Y    FY+ +TY I   T  S+ KY
Sbjct: 222 FVHWTYIQKLFYQTITYQIISRTSYSLNKY 251


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 750 ELKMQHCAIKKRRVLKALSY 691
           +LK+ HC IK  R+++ +SY
Sbjct: 757 DLKLYHCLIKSGRLVEYVSY 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,269
Number of Sequences: 5004
Number of extensions: 60661
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)