Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P19
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    88   2e-18
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    29   1.0  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    28   1.4  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    27   2.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   4.1  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   7.2  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   7.2  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   9.6  

>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 45/145 (31%), Positives = 74/145 (51%)
 Frame = -1

Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
           F A R+    +P          DP VI + I V   H  ++   +DI +  +D   +Q+ 
Sbjct: 258 FEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSE-HTVEKVTIFDIRINTEDPRHSQIR 316

Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
           +FL +  +Q +I+ +D K+ E +  I   ++  +F   FS+ P +FI +W+ SQSRDL+ 
Sbjct: 317 SFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEI 376

Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
           V  G + N  E+R A +Y   W  E
Sbjct: 377 VLDGTNMNYAEKRSADYYQQPWVHE 401


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/53 (20%), Positives = 32/53 (60%)
 Frame = -1

Query: 350 QQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSV 192
           QQ+I  L+++++E  +T+  L+  R+F+ +  ++ +  +Q  L +    ++++
Sbjct: 178 QQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSMENM 230


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 265 KKNSRFVFNWLMVSTVSWILESRPWIS 345
           KKNS+ ++N L+  T++W   S  W+S
Sbjct: 28  KKNSKHLYNLLITRTLTWPSLSIQWLS 54


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 371 FLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWL 222
           F    AN  E +GL  K  E      ++K     FL F +  QQF  +WL
Sbjct: 152 FYEEYANYFESRGLFQKADEVYQKGKRMKAKP--FLRFQQKYQQFTHRWL 199


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -1

Query: 416  IDVEVDDTLKAQMNNFLXSTANQQEIQGLDSKIH----ETVDTINQLKTNREFFLSFSKD 249
            + +++ D L A  NN++        +  LD  +H    E++  +N+   +R   LS  +D
Sbjct: 1571 LSMDLQDALNAYFNNYVSEENRSHTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRD 1630


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 413 DVEVDDTLKAQMNNFLXSTANQQEIQGLDSKIHETVDTINQLKTNRE 273
           D +  + L + +   L +T   +   G   K+HE  DT+N  K  +E
Sbjct: 373 DFKSQEELISSLTTGLSTTEGHET--GYSRKLHEARDTLNDFKAEKE 417


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 362 STANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSK 252
           STA+++ I  L  + HE++  ++  K N+  F  FS+
Sbjct: 113 STADEKLISQLGEEAHESLLKVHIEKANKHLFSLFSR 149


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 204 VSGLTDEPLLDELLRILAEAQEELAVCFQLVDG 302
           +S +T EP+  ++ +++ + Q+E+    + VDG
Sbjct: 1   MSDITVEPIGKQMEKLILDVQQEIVAGLEAVDG 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,877
Number of Sequences: 5004
Number of extensions: 30391
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)