Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_P19
(806 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009368-1|AAH09368.3| 476|Homo sapiens SWI/SNF related, matrix... 190 7e-48
AF109733-1|AAD23390.1| 453|Homo sapiens SWI/SNF-related, matrix... 190 7e-48
U66618-1|AAC50696.1| 475|Homo sapiens SWI/SNF complex 60 KDa su... 187 5e-47
BC142963-1|AAI42964.1| 531|Homo sapiens SMARCD2 protein protein. 183 6e-46
BC110350-1|AAI10351.1| 470|Homo sapiens SWI/SNF related, matrix... 180 4e-45
BC002628-1|AAH02628.1| 470|Homo sapiens SWI/SNF related, matrix... 180 4e-45
AY450431-1|AAR88511.1| 470|Homo sapiens 60kDa BRG-1/Brm associa... 180 4e-45
AY450430-1|AAR88510.1| 483|Homo sapiens 60kDa BRG-1/Brm associa... 180 4e-45
AC021097-1|AAS00380.1| 170|Homo sapiens unknown protein. 180 4e-45
U66619-1|AAC50697.1| 469|Homo sapiens SWI/SNF complex 60 KDa su... 180 7e-45
U66617-1|AAC50695.1| 435|Homo sapiens SWI/SNF complex 60 KDa su... 99 9e-21
BC018953-1|AAH18953.2| 78|Homo sapiens SMARCD2 protein protein. 70 9e-12
>BC009368-1|AAH09368.3| 476|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 476
Score = 190 bits (462), Expect = 7e-48
Identities = 92/145 (63%), Positives = 113/145 (77%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F + R+K +E+P R AL P+P +INHVI+V+P +D K+TA YDIDVEVDDTLK QMN
Sbjct: 308 FESQRMKFSEIPQRLHALLMPPEPIIINHVISVDP-NDQKKTACYDIDVEVDDTLKTQMN 366
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
+FL STA+QQEI LD+KIHET++TINQLKT REF LSF++DPQ FI WL SQ RDLK+
Sbjct: 367 SFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKT 426
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
++ GNPEEERRA+FY WA E
Sbjct: 427 MT-DVVGNPEEERRAEFYFQPWAQE 450
>AF109733-1|AAD23390.1| 453|Homo sapiens SWI/SNF-related,
matrix-associated, actin-dependent regulator of
chromatin D1 protein.
Length = 453
Score = 190 bits (462), Expect = 7e-48
Identities = 92/145 (63%), Positives = 113/145 (77%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F + R+K +E+P R AL P+P +INHVI+V+P +D K+TA YDIDVEVDDTLK QMN
Sbjct: 285 FESQRMKFSEIPQRLHALLMPPEPIIINHVISVDP-NDQKKTACYDIDVEVDDTLKTQMN 343
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
+FL STA+QQEI LD+KIHET++TINQLKT REF LSF++DPQ FI WL SQ RDLK+
Sbjct: 344 SFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKT 403
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
++ GNPEEERRA+FY WA E
Sbjct: 404 MT-DVVGNPEEERRAEFYFQPWAQE 427
>U66618-1|AAC50696.1| 475|Homo sapiens SWI/SNF complex 60 KDa
subunit protein.
Length = 475
Score = 187 bits (455), Expect = 5e-47
Identities = 91/145 (62%), Positives = 109/145 (75%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F R++ +E+P + L PDP VINHVI+V+P +D K+TA YDIDVEVDD LKAQM+
Sbjct: 307 FSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDP-NDQKKTACYDIDVEVDDPLKAQMS 365
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
NFL ST NQQEI LD KIHET+++INQLKT R+F LSFS DPQ FIQ+WL SQ RDLK
Sbjct: 366 NFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKI 425
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
++ +GNPEEERRA FY WA E
Sbjct: 426 IT-DVTGNPEEERRAAFYHQPWAQE 449
>BC142963-1|AAI42964.1| 531|Homo sapiens SMARCD2 protein protein.
Length = 531
Score = 183 bits (446), Expect = 6e-46
Identities = 90/145 (62%), Positives = 107/145 (73%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F R+ +++P + L PDP VINHVI+V+P +D K+TA YDIDVEVDD LKAQM+
Sbjct: 363 FSCGRLSFSKIPMKLAGLLQHPDPIVINHVISVDP-NDQKKTACYDIDVEVDDPLKAQMS 421
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
NFL ST NQQEI LD KIHET+++INQLKT R+F LSFS DPQ FIQ+WL SQ RDLK
Sbjct: 422 NFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKI 481
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
++ GNPEEERRA FY WA E
Sbjct: 482 IT-DVIGNPEEERRAAFYHQPWAQE 505
>BC110350-1|AAI10351.1| 470|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 470
Score = 180 bits (439), Expect = 4e-45
Identities = 89/145 (61%), Positives = 110/145 (75%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F PR+K +E+P R AL PDP VINHVI+V+P D K+TA YDIDVEV++ LK QM+
Sbjct: 302 FDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPS-DQKKTACYDIDVEVEEPLKGQMS 360
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
+FL STANQQEI LDSKIHET+++INQLK R+F LSFS+DP+ ++Q L SQSRDLK
Sbjct: 361 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK- 419
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
V +GNPEEERRA+FY W+ E
Sbjct: 420 VMTDVAGNPEEERRAEFYHQPWSQE 444
>BC002628-1|AAH02628.1| 470|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 470
Score = 180 bits (439), Expect = 4e-45
Identities = 89/145 (61%), Positives = 110/145 (75%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F PR+K +E+P R AL PDP VINHVI+V+P D K+TA YDIDVEV++ LK QM+
Sbjct: 302 FDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPS-DQKKTACYDIDVEVEEPLKGQMS 360
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
+FL STANQQEI LDSKIHET+++INQLK R+F LSFS+DP+ ++Q L SQSRDLK
Sbjct: 361 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK- 419
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
V +GNPEEERRA+FY W+ E
Sbjct: 420 VMTDVAGNPEEERRAEFYHQPWSQE 444
>AY450431-1|AAR88511.1| 470|Homo sapiens 60kDa BRG-1/Brm associated
factor subunit c isoform 1 protein.
Length = 470
Score = 180 bits (439), Expect = 4e-45
Identities = 89/145 (61%), Positives = 110/145 (75%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F PR+K +E+P R AL PDP VINHVI+V+P D K+TA YDIDVEV++ LK QM+
Sbjct: 302 FDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPS-DQKKTACYDIDVEVEEPLKGQMS 360
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
+FL STANQQEI LDSKIHET+++INQLK R+F LSFS+DP+ ++Q L SQSRDLK
Sbjct: 361 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK- 419
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
V +GNPEEERRA+FY W+ E
Sbjct: 420 VMTDVAGNPEEERRAEFYHQPWSQE 444
>AY450430-1|AAR88510.1| 483|Homo sapiens 60kDa BRG-1/Brm associated
factor subunit c isoform 2 protein.
Length = 483
Score = 180 bits (439), Expect = 4e-45
Identities = 89/145 (61%), Positives = 110/145 (75%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F PR+K +E+P R AL PDP VINHVI+V+P D K+TA YDIDVEV++ LK QM+
Sbjct: 315 FDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPS-DQKKTACYDIDVEVEEPLKGQMS 373
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
+FL STANQQEI LDSKIHET+++INQLK R+F LSFS+DP+ ++Q L SQSRDLK
Sbjct: 374 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK- 432
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
V +GNPEEERRA+FY W+ E
Sbjct: 433 VMTDVAGNPEEERRAEFYHQPWSQE 457
>AC021097-1|AAS00380.1| 170|Homo sapiens unknown protein.
Length = 170
Score = 180 bits (439), Expect = 4e-45
Identities = 89/145 (61%), Positives = 110/145 (75%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F PR+K +E+P R AL PDP VINHVI+V+P D K+TA YDIDVEV++ LK QM+
Sbjct: 2 FDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPS-DQKKTACYDIDVEVEEPLKGQMS 60
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
+FL STANQQEI LDSKIHET+++INQLK R+F LSFS+DP+ ++Q L SQSRDLK
Sbjct: 61 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK- 119
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
V +GNPEEERRA+FY W+ E
Sbjct: 120 VMTDVAGNPEEERRAEFYHQPWSQE 144
>U66619-1|AAC50697.1| 469|Homo sapiens SWI/SNF complex 60 KDa
subunit protein.
Length = 469
Score = 180 bits (437), Expect = 7e-45
Identities = 89/145 (61%), Positives = 110/145 (75%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F PR+K +E+P R AL PDP VINHVI+V+P D K+TA YDIDVEV++ LK QM+
Sbjct: 301 FDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPS-DQKKTACYDIDVEVEEPLKGQMS 359
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKS 195
+FL STANQQEI LDSKIHET+++INQLK R+F LSFS+DP+ ++Q L SQSRDLK
Sbjct: 360 SFLLSTANQQEISPLDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK- 418
Query: 194 VSGGASGNPEEERRAQFYCAGWAGE 120
V +GNPEEERRA+FY W+ E
Sbjct: 419 VMTDVAGNPEEERRAEFYHQPWSQE 443
>U66617-1|AAC50695.1| 435|Homo sapiens SWI/SNF complex 60 KDa
subunit protein.
Length = 435
Score = 99 bits (238), Expect = 9e-21
Identities = 53/114 (46%), Positives = 72/114 (63%)
Frame = -1
Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMN 375
F R+K +E+P R AL P+P +INHVI+V+P +D K+TA YDIDVEVDDTLK QMN
Sbjct: 308 FETQRMKFSEIPQRLHALLMPPEPIIINHVISVDP-NDQKKTACYDIDVEVDDTLKTQMN 366
Query: 374 NFLXSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQ 213
+FL STA+QQEI LD+K D + + R F Q+ + ++ S+
Sbjct: 367 SFLLSTASQQEIATLDNK--TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 418
Score = 34.7 bits (76), Expect = 0.40
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 176 GNPEEERRAQFYCAGWAGE 120
GNPEEERRA+FY WA E
Sbjct: 391 GNPEEERRAEFYFQPWAQE 409
>BC018953-1|AAH18953.2| 78|Homo sapiens SMARCD2 protein protein.
Length = 78
Score = 70.1 bits (164), Expect = 9e-12
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = -1
Query: 278 REFFLSFSKDPQQFIQKWLVSQSRDLKSVSGGASGNPEEERRAQFYCAGWAGE 120
R+F LSFS DPQ FIQ+WL SQ RDLK ++ GNPEEERRA FY WA E
Sbjct: 1 RDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQE 52
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,371,761
Number of Sequences: 237096
Number of extensions: 1441281
Number of successful extensions: 4473
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4450
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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