Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P15
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1354 - 29520376-29520582,29520668-29520795,29521015-295210...    29   3.2  
11_06_0183 - 20999343-20999865,21000351-21000748                       29   5.5  
07_03_0132 - 14011468-14012124                                         28   9.7  
03_01_0159 + 1298002-1298070,1298181-1298264,1300354-1300506,130...    28   9.7  

>06_03_1354 -
           29520376-29520582,29520668-29520795,29521015-29521099,
           29521169-29521522
          Length = 257

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 548 WRPRPVRATDASKAAETRTGPSFTNTS 628
           WRPRP  AT AS AA +  GP  T  +
Sbjct: 29  WRPRPRPATVASTAAMSVRGPGTTQAA 55


>11_06_0183 - 20999343-20999865,21000351-21000748
          Length = 306

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 545 TWRPRPVRATDASKAAETRTGPSFTNTSHGRPKLNCPSII 664
           TWRP P  A D +K AE R   S  +   G   +  P +I
Sbjct: 151 TWRPPPPPADDDAKPAEPRVSLSALSVVGGDNTMRLPVMI 190


>07_03_0132 - 14011468-14012124
          Length = 218

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 578 RPWRVPGEAAKSPDEAENDPIGPLLIVFQKRFKIMTP 468
           RPW+  GE A  P +  +DP G L  + ++     TP
Sbjct: 174 RPWKAAGENAGVPGDWGHDPRGKLGGIEEESMGFKTP 210


>03_01_0159 +
           1298002-1298070,1298181-1298264,1300354-1300506,
           1300589-1300702,1300814-1300876
          Length = 160

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 423 SQNVALGRVRTTRSRWRHNF-KAFLEYNE*WADGVILRLVW 542
           S  +A GR+   R  WR N    F+   E  ADG +  ++W
Sbjct: 2   SGGIARGRLAEERKAWRKNHPHGFVAKPETLADGTVNLMIW 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,043,381
Number of Sequences: 37544
Number of extensions: 345028
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)