Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P14
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    28   1.8  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   9.6  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    25   9.6  

>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 414 QKLFTWLWHGGRIIPIKGVRIAQTKSFSYGSVTEALIALFIILNCHGHLRNIG 256
           +KL T+ WH G +IP   ++I+  K  +      +       L+ HG  R  G
Sbjct: 40  EKLPTFSWHEGMLIPGSNMQISFVKDLATPRDPTSYFTFLNYLHSHGQERLSG 92


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 336 FSYGSVTEALIALFIILNCHGHLRNIGINRFVYF 235
           F Y + TE   ALFII       R +G +RF  F
Sbjct: 59  FIYWNSTEVFQALFIIYQARDVERLLGSHRFASF 92


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 437 VDDVYIRNRNYLHGYGTVAVSYLSKVS 357
           ++D+Y+R +    GYG+  +SYL++ S
Sbjct: 87  LEDLYVRPQFRGKGYGSYLLSYLARES 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,748
Number of Sequences: 5004
Number of extensions: 62855
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)