Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_P10
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 210 1e-55
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 205 7e-54
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 81 3e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 34 0.030
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 27 3.4
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 27 4.5
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 210 bits (514), Expect = 1e-55
Identities = 93/133 (69%), Positives = 106/133 (79%)
Frame = -3
Query: 585 PRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVPGG 406
PR G+YMA C+LYRGDV+P+DV +IK++RTI VDWCPTGFK+GI Y+PP VPG
Sbjct: 311 PRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGS 370
Query: 405 XLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREXLA 226
+AKV A CMLS TT+ AE W LDHKFDLMY+K FVHW VGEGMEEGEFSEARE LA
Sbjct: 371 GIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 430
Query: 225 ALEKDYEEVGMDS 187
ALE+DYEEVG DS
Sbjct: 431 ALERDYEEVGQDS 443
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI FP V P++ A A+HE S ITN CFEP NQMVKC P
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP 311
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 205 bits (500), Expect = 7e-54
Identities = 92/133 (69%), Positives = 103/133 (77%)
Frame = -3
Query: 585 PRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVPGG 406
PR G+YMA C+LYRGDV+P+DV TIK KRTI VDWCPTGFK+GI +PP + G
Sbjct: 307 PRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366
Query: 405 XLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREXLA 226
+AKV A CMLS TT+ AE W LDHKFDLMY+K FVHW VGEGMEEGEFSEARE LA
Sbjct: 367 EIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 426
Query: 225 ALEKDYEEVGMDS 187
ALE+DYEEVG DS
Sbjct: 427 ALERDYEEVGQDS 439
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI FP V P++ A A+HE S ITN CFEP NQMVKC P
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP 307
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 80.6 bits (190), Expect = 3e-16
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ L+RG V K+V +++TK + V+W P + PP
Sbjct: 303 ADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK--- 359
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
++ +A + +T+ E + L +F M+ + F+HW GEGM+E EF+EA
Sbjct: 360 -----DLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 231 LAALEKD---YEEVGMD 190
+ L + Y+E G+D
Sbjct: 415 MNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 33.9 bits (74), Expect = 0.030
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Frame = -3
Query: 552 LYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVPGGXLAKVQXAACM 373
+ +G+ P DV I+ +R + W P +V + + P + + + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYI-----KTNHRVSGLM 377
Query: 372 LSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEE---GEFSEAREXLAALEKDYE 205
L+ T+ A + ++D + + F+ E + E EF +R+ +A L +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +3
Query: 528 WVXRHHGTAYSKPCTCHDGGSHFTIWLAGSKHAFVIPAXEXCSW 659
W H Y+KPC DGG W G IP SW
Sbjct: 16 WRRDHPFGFYAKPCKSSDGGLDLMNWKVG------IPGKPKTSW 53
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 440 IPTLKPVGHQ-STNXIVRLVL--MVAMAAFTSLGTTSP 544
+P+LKP+ HQ S N + R + ++A F G+T P
Sbjct: 28 VPSLKPLPHQDSKNLLYRQICGRLLAQHVFGGAGSTQP 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,713
Number of Sequences: 5004
Number of extensions: 33506
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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