Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P10
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   2.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   8.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 258 PPPYPHRXTSAQXHXWRT 311
           P P+P R T AQ H + T
Sbjct: 417 PKPFPRRATLAQLHNFTT 434


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 646 SXAGITNACFEPANQMVKCXPPSWQV 569
           S  G T ACFEP+        P W +
Sbjct: 164 SVTGKTTACFEPSLDYCVVKIPRWDL 189


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 634 ITNACFEPANQMVKCXPPSWQVHGLLYAV 548
           +T AC   A   + C   +W  + L+Y +
Sbjct: 7   VTVACLLLAASPIDCVDANWYKNALVYQI 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,631
Number of Sequences: 438
Number of extensions: 3140
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)